View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_18 (Length: 392)
Name: NF5076_low_18
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 41775820 - 41776196
Alignment:
| Q |
1 |
taattctcgtggggaacgtaagaaaatcttatctattttcaaatttatgttggattcattaggtgtactagtattttcaaattaatcaataaatgaaaac |
100 |
Q |
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| T |
41775820 |
taattctcgtggggaacgtaagaaaatcttatctattttcaaatttatgttggattcattaggtgtactagtattttcaaattaatcaataaatgaaaac |
41775919 |
T |
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| Q |
101 |
atacaaatatggagtgatgctaacttaattgtttcttgaaatatgcagttctaattgacacggaatatgatccgttggtacctagagaagagaaaactcc |
200 |
Q |
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| T |
41775920 |
atacaaatatggagtgatgctaacttaattgtttcttgaaatatgcagttctaattgacacggaatatgatccgttggtacctagagaagagaaaactcc |
41776019 |
T |
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| Q |
201 |
tatggtattaaaacttctttgtttaaacaaacttat-aaactttcatctacttattgattggtcggaagttgactctttattttaatgtttcttaaaaca |
299 |
Q |
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| T |
41776020 |
tatggtattaaaacttctttgtttaaacaaacttataaaactttcatctacttattggttggtcggaagttgactctttattttaatgtttcttaaaaca |
41776119 |
T |
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| Q |
300 |
gcaaatattctgttccaaccttaagtggaaaaggattttggtgttaatgattgtgtgggtttctttcttactacttc |
376 |
Q |
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| T |
41776120 |
gcaaatattctgttccaaccttaagtggaaaaggattttggtgttaatgattgtgtgggtttctttcttactacttc |
41776196 |
T |
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