View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_low_2 (Length: 553)
Name: NF5076_low_2
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Complemental strand, 608598 - 608076
Alignment:
| Q |
13 |
aatataacaatgagcacaaataagaggaagtctctcatattttactccgatgtaaaaagcaaaacattatatttcctaccatgattttattatgtgatat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
608598 |
aatatgacaatgagcacaaataagaggaagtctctcatgttctactccgatgtaaaaagcaaaacattatatttcctaccatgattttattatttgatat |
608499 |
T |
|
| Q |
113 |
tattgttaacaagaacccttacaaaaatgatcgaaaacacgatttctcgtgactatatatctaaagtaattggagtctcaatactgcaagaatttttaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
608498 |
tattgttaacaagaacccttacaaaa-tgatcgaaaacacaatccctcgtgactatat--ctaaagtaattggagtctcaatactacaagaaattttaaa |
608402 |
T |
|
| Q |
213 |
tagaagtctatgttcccaatattccaacgacaaattgattgataggatccaacattgtacatttgtttatctatgtttgctcggactgaaaactagagtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608401 |
tagaagtctatgttcccaatattccaacgacaaattgattgataggatccaacattgtacatttgtttatctatgtttgctcggactgaaaactagagtt |
608302 |
T |
|
| Q |
313 |
cactcgttcaaatgcaagatgctaggatgtcgaggttatgcttccacattcaggcgcttctcaaatcctcttcagaagcatcttccaagtttgctaattt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
608301 |
cactcgttcaaatgcaagatgctaggatgtcgaggttatgcttccacattcaggcgcttctcaaatcctctttaaaagcatcttccaagtttgctaattt |
608202 |
T |
|
| Q |
413 |
ggatagaaaggtcctcgattttagaagtgtatcctccttctgcattgtaactttgcaatgtagtttgttcttgcgttttaccaaccctagttgatataaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608201 |
ggatagaaaggtcctcgattttagaagtgtatcctccttctgcattgtaactttgcaatgtagtttgttcttgcgttttaccaaccctagttgatataaa |
608102 |
T |
|
| Q |
513 |
tcatcggaatttttaattaatagtga |
538 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
608101 |
tcatcggaatttttaattaatagtga |
608076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 3090970 - 3090918
Alignment:
| Q |
259 |
atccaacattgtacatttgtttatctatgtttgctcggactgaaaactagagt |
311 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
3090970 |
atccaacattgaacattgatttatctttgtttgctcggactgaagtctagagt |
3090918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University