View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_low_21 (Length: 381)
Name: NF5076_low_21
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 28755008 - 28754660
Alignment:
| Q |
19 |
gttttgggatttaaatctttaaggtctaatgttggtgttggtgtttcttttgatgaaaccctaattagtgatgttggaggaaacaatgatggttttgttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28755008 |
gttttgggatttaaatctttaaggtctaatgttggtgttggtgtttcttttgatgaaaccctaattagtgatgttggaggaaacaatgatggttttgttg |
28754909 |
T |
|
| Q |
119 |
acatgctttctgggactaatgtggttgggtttcataaggattcagggtgtggaaaagagggtttttgtgatgaaaaagttaatggttttgaggatggcgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28754908 |
acatgctttctgggactaatgtggttgggtttcataaggattcagggtgtggaaaagagggtttttgtgatgaaaaagttaatggttttgaggatggcgg |
28754809 |
T |
|
| Q |
219 |
aatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgattcaatgttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28754808 |
aatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgattcaatgttct |
28754709 |
T |
|
| Q |
319 |
gatggaggtgcagagtctgataaaggtttgatttttggattgaatgatg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28754708 |
gatggaggtgcagagtctgataaaggtttggtttttggattgaatgatg |
28754660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 44864078 - 44864195
Alignment:
| Q |
250 |
gggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgattcaatgttctgatggaggtgcagagtctgataaaggtttga |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
44864078 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtgtgattcaatgttctgatggaggtgcaatgtctgatcaaggtttgg |
44864177 |
T |
|
| Q |
350 |
tttttggattgaatgatg |
367 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
44864178 |
tttttgaattgaatgatg |
44864195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 45248444 - 45248353
Alignment:
| Q |
218 |
gaatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgatt |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
45248444 |
gaatgtttgatgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
45248353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University