View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_23 (Length: 377)
Name: NF5076_low_23
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 26440590 - 26440216
Alignment:
| Q |
8 |
tcgaagaatattaacaatatatcaaattttcataannnnnnnnnaatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagag |
107 |
Q |
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| T |
26440590 |
tcgatgaatattatcaatatatcaaattttcataatttttttt-aatagataataaaaaatatttaagttcaaagttgtacattgacatacgtgacaga- |
26440493 |
T |
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| Q |
108 |
tcaactggtcatataatatagaactgaaggaatatctttttacttgtttt---------tacctatagactattttgacgcg-cttttcaattgctagag |
197 |
Q |
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| T |
26440492 |
---agtg-tcacataatataaaactgaagaaatatcttttcatttgttttaaagcaccgtacctatagactattttgacgcgtcttttcaattgctagag |
26440397 |
T |
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| Q |
198 |
tccaattcttaaaattgagtaaaatgnnnnnnnnn-cttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgataaaaaaaca |
296 |
Q |
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| T |
26440396 |
tccaattctcaaaattgagcaaaatgtttttcttttcttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaaca |
26440297 |
T |
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| Q |
297 |
taatgattaatgtgccagnnnnnnnnnncataatgattnnnnnnnggaattttcgcaataaattttttaaaggcagtgtct |
377 |
Q |
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| T |
26440296 |
taatgattaatgtgccagaaaaaaaaaacataatgattaaaaaaaggaattttcgcaataaattttttaaatgcagtgtct |
26440216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 26452422 - 26452364
Alignment:
| Q |
244 |
aacattgagtaaattgttgacctttttgataaaaatataatgataaaaaaacataatga |
302 |
Q |
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| T |
26452422 |
aacattgagtaaattgttgatctttttgataaaaacataatgattaaaaagcataatga |
26452364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 34278659 - 34278584
Alignment:
| Q |
52 |
aatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatat |
126 |
Q |
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| T |
34278659 |
aatagattattaaatatatttaagtttaaaattgtacattgacatacacgacagagtcaactaggtcacataatat |
34278584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 20651582 - 20651642
Alignment:
| Q |
53 |
atagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact |
113 |
Q |
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| T |
20651582 |
atagattattaaaaatatttaagttcaaaattgtgcattgacatacgtgacagagtcaact |
20651642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 14802848 - 14802786
Alignment:
| Q |
67 |
atatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatatag |
128 |
Q |
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| T |
14802848 |
atatttaagttcaaatatgtgcattgacatacttgacagagtcaactaggtcatataatatag |
14802786 |
T |
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