View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_24 (Length: 372)

Name: NF5076_low_24
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_24
NF5076_low_24
[»] chr1 (11 HSPs)
chr1 (18-372)||(50944877-50945233)
chr1 (280-355)||(12779932-12780008)
chr1 (280-355)||(5881025-5881100)
chr1 (286-355)||(50944348-50944419)
chr1 (118-253)||(31239015-31239151)
chr1 (280-326)||(925270-925317)
chr1 (118-152)||(10427565-10427599)
chr1 (286-355)||(27307907-27307977)
chr1 (281-348)||(27904587-27904656)
chr1 (280-353)||(34011445-34011519)
chr1 (280-355)||(11407045-11407121)
[»] chr8 (14 HSPs)
chr8 (280-355)||(33192691-33192766)
chr8 (294-352)||(18994961-18995019)
chr8 (118-166)||(11420400-11420448)
chr8 (280-352)||(34179722-34179794)
chr8 (280-326)||(14976113-14976159)
chr8 (120-162)||(17950035-17950077)
chr8 (281-344)||(29039395-29039460)
chr8 (297-355)||(30800779-30800837)
chr8 (118-156)||(34103484-34103522)
chr8 (280-321)||(20286779-20286820)
chr8 (280-321)||(21073408-21073449)
chr8 (118-154)||(31261284-31261320)
chr8 (280-344)||(43920290-43920354)
chr8 (280-355)||(44057729-44057802)
[»] chr7 (13 HSPs)
chr7 (286-355)||(29366722-29366793)
chr7 (280-355)||(2275931-2276006)
chr7 (280-355)||(20034718-20034792)
chr7 (280-355)||(20045128-20045203)
chr7 (293-353)||(7956939-7956999)
chr7 (118-166)||(24650013-24650061)
chr7 (118-166)||(47437783-47437831)
chr7 (288-355)||(38175317-38175384)
chr7 (280-355)||(20149501-20149578)
chr7 (280-353)||(11651860-11651933)
chr7 (118-166)||(10039936-10039984)
chr7 (280-355)||(27250487-27250560)
chr7 (286-355)||(39618481-39618551)
[»] chr4 (17 HSPs)
chr4 (280-353)||(29656377-29656452)
chr4 (196-280)||(4505728-4505810)
chr4 (280-355)||(18417399-18417474)
chr4 (297-355)||(375976-376034)
chr4 (282-355)||(23432027-23432100)
chr4 (299-355)||(7396047-7396103)
chr4 (281-352)||(7438475-7438546)
chr4 (201-279)||(16554501-16554577)
chr4 (280-355)||(7059128-7059205)
chr4 (281-355)||(12214799-12214873)
chr4 (280-353)||(54856317-54856391)
chr4 (298-355)||(44469167-44469224)
chr4 (295-355)||(15849323-15849383)
chr4 (280-355)||(23019615-23019688)
chr4 (122-166)||(28588342-28588386)
chr4 (280-355)||(35603362-35603439)
chr4 (280-336)||(50179097-50179153)
[»] chr6 (7 HSPs)
chr6 (280-352)||(17352872-17352946)
chr6 (280-353)||(18625270-18625343)
chr6 (280-355)||(14910086-14910161)
chr6 (118-166)||(8866848-8866896)
chr6 (286-355)||(10459897-10459966)
chr6 (280-336)||(25056314-25056370)
chr6 (323-370)||(28592392-28592437)
[»] chr3 (19 HSPs)
chr3 (280-355)||(35379643-35379718)
chr3 (280-355)||(611428-611505)
chr3 (196-280)||(47410565-47410647)
chr3 (280-353)||(4578060-4578134)
chr3 (280-355)||(18956719-18956796)
chr3 (286-351)||(45643888-45643953)
chr3 (280-321)||(49429591-49429632)
chr3 (280-355)||(5907534-5907610)
chr3 (261-313)||(15522251-15522302)
chr3 (118-166)||(50585780-50585828)
chr3 (280-355)||(17438981-17439058)
chr3 (254-283)||(7116337-7116366)
chr3 (296-353)||(10436326-10436383)
chr3 (256-284)||(9773916-9773944)
chr3 (116-156)||(23344654-23344694)
chr3 (286-355)||(26130354-26130425)
chr3 (288-355)||(35938632-35938700)
chr3 (118-166)||(47410956-47411004)
chr3 (118-166)||(47411092-47411140)
[»] scaffold0888 (1 HSPs)
scaffold0888 (281-355)||(1263-1337)
[»] chr5 (14 HSPs)
chr5 (280-355)||(13998986-13999063)
chr5 (200-277)||(35695190-35695265)
chr5 (299-371)||(4326662-4326733)
chr5 (288-355)||(8839605-8839673)
chr5 (299-355)||(19929757-19929813)
chr5 (299-355)||(42097240-42097296)
chr5 (288-353)||(42515934-42516001)
chr5 (280-355)||(5025418-5025493)
chr5 (280-355)||(35271891-35271966)
chr5 (280-353)||(3860382-3860455)
chr5 (286-355)||(17013784-17013852)
chr5 (121-166)||(29686208-29686253)
chr5 (280-353)||(33628900-33628973)
chr5 (118-166)||(29663442-29663490)
[»] chr2 (11 HSPs)
chr2 (280-355)||(5879909-5879984)
chr2 (280-318)||(10552706-10552744)
chr2 (280-355)||(22882182-22882259)
chr2 (256-286)||(35193680-35193710)
chr2 (118-156)||(35468775-35468813)
chr2 (299-352)||(36802032-36802085)
chr2 (280-355)||(1110819-1110897)
chr2 (280-355)||(15248909-15248982)
chr2 (280-355)||(33676963-33677039)
chr2 (202-280)||(38502174-38502249)
chr2 (299-355)||(43709784-43709839)
[»] scaffold0018 (1 HSPs)
scaffold0018 (118-154)||(36501-36537)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 50945233 - 50944877
Alignment:
Q  18 caaccgaatgagggatccaagtgacatcctagtgatcagaaaatcagagaggcaccaagctccatccaaaatacaatcagggaggtaacaaaaatagata 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50945233 caaccgaaggagggatccaagtgacatcctagtgatcagaaaatcagggaggcaccaagctccatccaaaatacaatcagggaggtaacaaaaatagata 50945134  T
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatctttagaaatgaccctaataaaatnnnnnnnt--ttagtcaaatttgtttgaggg 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  50945133 tttcaatgatatcaacattataacaaatataatataaatccttatctttagaaatgaccctaataaaataaaataaaaattagtcaaatttgtttgaggg 50945034  T
Q  216 tataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtatagataatatagagaaaacaacctctttcagctcttttgggc 315  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  50945033 tataattggatgtgaaaatgtcagtccaaaatcatgtattttttctttatatatagtatagataatatagagaaaacaacctcttttagctcttttgggt 50944934  T
Q  316 tgacttcttctttccataaatgccctcaaatttcaatacacgtgtaacaaatagata 372  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50944933 tgactttttctttccataaatgccctcaaatttcaatacacgtgtaacaaatagata 50944877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 12779932 - 12780008
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgac-ttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||| ||||||||||||||||||||||| || ||||||||| || ||||||||| ||||||||||    
T  12779932 atataaagaaaacaacttctttcagctcttttgggctgacttttttctttccaaaattgccctcaattttcaataca 12780008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 5881100 - 5881025
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||  |||||||||||||||||||| || |||||| |||||||| | |||| ||||||||||    
T  5881100 atataaagaaaacaaccattttcagctcttttgggctgaatttttcttttcataaatgtcatcaattttcaataca 5881025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 50944419 - 50944348
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttct--ttccataaatgccctcaaatttcaataca 355  Q
    |||||||||| ||||||| ||||||||| ||||||| ||||  ||||| |||||||||||| ||||||||||    
T  50944419 agaaaacaacatctttcatctcttttggtctgactttttctctttccaaaaatgccctcaattttcaataca 50944348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 31239151 - 31239015
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatctttagaaatgaccctaataaaatnnnnnnnttta-gtcaaatttgtttgagggt 216  Q
    |||||| |||||||| | |||||||||||||||||||||  ||||||||  ||||||  | ||||||||       ||   || |||||||||| |||||    
T  31239151 tttcaaggatatcaagaatataacaaatataatataaattcttatctttttaaatgataccaataaaatagcattcttactgtgaaatttgtttaagggt 31239052  T
Q  217 ataattggatgtgaaaatgtcagtccaaaaccatgta 253  Q
    ||||||| | ||||||| ||||| |||||||||||||    
T  31239051 ataattgaaagtgaaaaagtcagcccaaaaccatgta 31239015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 925317 - 925270
Alignment:
Q  280 atatagagaaaacaac-ctctttcagctcttttgggctgacttcttct 326  Q
    ||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  925317 atataaagaaaacaactctctttcagctcttttgggctgactttttct 925270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 10427599 - 10427565
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatat 152  Q
    ||||||||||||||||| |||||||||||||||||    
T  10427599 tttcaatgatatcaacaatataacaaatataatat 10427565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 27307977 - 27307907
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttctt-ctttccataaatgccctcaaatttcaataca 355  Q
    ||||||| ||| |||||| | ||||||||||||||| || ||||||| |||| ||||||| ||||||||||    
T  27307977 agaaaactacccctttcaacacttttgggctgactttttcctttccaaaaataccctcaattttcaataca 27307907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 27904656 - 27904587
Alignment:
Q  281 tatagagaaaacaacctctttcagctcttttgggctgacttcttcttt--ccataaatgccctcaaattt 348  Q
    |||| |||||| ||||||||| ||||||||| || |||||| ||||||  ||| ||||||||||||||||    
T  27904656 tataaagaaaataacctcttttagctcttttaggttgactttttctttttccaaaaatgccctcaaattt 27904587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 34011519 - 34011445
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct-tctttccataaatgccctcaaatttcaata 353  Q
    ||||| |||||| ||| ||||||| ||||||| ||||||||| | || ||||| |||||||||||| ||||||||    
T  34011519 atataaagaaaataacttctttcaactcttttaggctgacttttctccttccaaaaatgccctcaattttcaata 34011445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 11407045 - 11407121
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggct-gacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| ||| |||| ||| |||||||||| || || ||||||||| |||| ||||||| ||||||||||    
T  11407045 atataaagaaaactaccgctttgagcacttttgggctggattttttctttccaaaaataccctcaattttcaataca 11407121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 33192766 - 33192691
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||| ||||||| ||||||||||||||||| | ||||||| |||||||||||| ||| ||||||    
T  33192766 atataaagaaaacaacttctttcaactcttttgggctgacttttcctttccaaaaatgccctcaattttgaataca 33192691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 18995019 - 18994961
Alignment:
Q  294 acctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaat 352  Q
    ||||||||||||||||||||| ||| || ||||||||| |||||||||| | |||||||    
T  18995019 acctctttcagctcttttgggttgaatttttctttccaaaaatgccctctactttcaat 18994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11420400 - 11420448
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  11420400 tttcaatgataccaacaatataacaaatataatataaattcttatcttt 11420448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 34179722 - 34179794
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaat 352  Q
    ||||| ||||||||||| |||| |||||||||||| ||  || |||||| || |||||||||||| |||||||    
T  34179722 atataaagaaaacaaccccttttagctcttttgggttggatttttcttttcaaaaatgccctcaattttcaat 34179794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 14976159 - 14976113
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttct 326  Q
    ||||| ||||||| || ||||||||||||||||||||||||| ||||    
T  14976159 atataaagaaaactacttctttcagctcttttgggctgactttttct 14976113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 17950077 - 17950035
Alignment:
Q  120 tcaatgatatcaacattataacaaatataatataaatcattat 162  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||    
T  17950077 tcaatgacatcaacaatataacaaatataatataaatccttat 17950035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 29039395 - 29039460
Alignment:
Q  281 tatagagaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaa 344  Q
    |||| |||||| |||||||||||| |||||| ||||||||| |  |||||||| ||||||||||||    
T  29039395 tataaagaaaataacctctttcagttcttttaggctgactttttctctttccaaaaatgccctcaa 29039460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 30800837 - 30800779
Alignment:
Q  297 tctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||||||||||| ||| || ||||||||| || ||| ||||| ||||||||||    
T  30800837 tctttcagctcttttgggttgaatttttctttccaaaattgctctcaattttcaataca 30800779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 34103522 - 34103484
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaat 156  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  34103522 tttcaatgacatcaacaatataacaaatataatataaat 34103484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 20286820 - 20286779
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgactt 321  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  20286820 atataaagaaaacaatctctttcagctcttttgggttgactt 20286779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 21073449 - 21073408
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgactt 321  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  21073449 atataaagaaaacaatctctttcagctcttttgggttgactt 21073408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 31261284 - 31261320
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataa 154  Q
    |||||||||||| |||| |||||||||||||||||||    
T  31261284 tttcaatgatattaacaatataacaaatataatataa 31261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 43920290 - 43920354
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaa 344  Q
    ||||| |||||||||  ||||||||||||||||   ||| || ||||||||| ||||||||||||    
T  43920290 atataaagaaaacaaattctttcagctcttttgaattgaatttttctttccaaaaatgccctcaa 43920354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 44057802 - 44057729
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||||||||||  |||||||| || ||  |||||| || |||||||| ||| ||||||||||    
T  44057802 atataaagaaaacaacctctttcag--cttttgggttggctgtttcttttcaaaaatgcccacaattttcaataca 44057729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 29366793 - 29366722
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttct--ttccataaatgccctcaaatttcaataca 355  Q
    ||||||| ||| ||||||||| |||||||||||||| ||||  ||||| |||||||||||||||||||||||    
T  29366793 agaaaaccaccactttcagctattttgggctgactttttctctttccaaaaatgccctcaaatttcaataca 29366722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 2276006 - 2275931
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| |||||||||| | | ||||||| || || ||||||||| |||||||||||| ||||||||||    
T  2276006 atataaagaaaactacctctttcaacacgtttgggccgaatttttctttccaaaaatgccctcaattttcaataca 2275931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 20034718 - 20034792
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| ||||||||||||||||||||| ||  || ||||||||| |||| ||||||| ||||||||||    
T  20034718 atataaagaaaactacctctttcagctcttttgggttggatt-ttctttccaaaaattccctcaattttcaataca 20034792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 20045128 - 20045203
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| ||| |||| |||||||||||| ||| || ||||||||| |||| ||||||| ||||||||||    
T  20045128 atataaagaaaactaccccttttagctcttttgggttgaatttttctttccaaaaattccctcaattttcaataca 20045203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 7956999 - 7956939
Alignment:
Q  293 aacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    |||| |||||| |||||||||||||| || ||||||||| ||||||| |||| ||||||||    
T  7956999 aacccctttcaactcttttgggctgaatttttctttccaaaaatgccttcaattttcaata 7956939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 24650061 - 24650013
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  24650061 tttcaatgataccaacaatataacaaatataatataaattcttatcttt 24650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 47437783 - 47437831
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||    
T  47437783 tttcaatgatatcaacaatataaaaaatataatataaattcttatcttt 47437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 38175384 - 38175317
Alignment:
Q  288 aaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||||||||| || |||||||||||||| ||| ||| | ||||| |||||| ||| ||||||    
T  38175384 aaaacaacctctttcatcttttttgggctgactttttccttcaaaaaatgtcctcaatttttaataca 38175317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 20149578 - 20149501
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgac--ttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||||| ||| ||||||| ||||||||| |||||  || ||  ||||| |||||||||||| ||||||||||    
T  20149578 atatagagaaaataacatctttcacctcttttggactgacatttttttcttccaaaaatgccctcaattttcaataca 20149501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 11651860 - 11651933
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    ||||| ||||||||||| |||||||| ||||||| ||| ||  |||||| || ||||| |||||| ||||||||    
T  11651860 atatatagaaaacaacccctttcagcacttttggactggctgtttcttttcaaaaatgacctcaattttcaata 11651933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 10039936 - 10039984
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||| | ||||| |||| |||||||||||||||| |||||||||    
T  10039936 tttcaatgacaccaacaatatagcaaatataatataaattattatcttt 10039984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 27250487 - 27250560
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||| |||||||||  |||||| || ||  |||||| || |||||||| ||||||||||||||    
T  27250487 atataaagaaaacaacccctttcagct--tttgggttggctgtttcttttcaaaaatgcccacaaatttcaataca 27250560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 39618481 - 39618551
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttct--ttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||| ||| ||||| |||||||||||||| ||||  ||||| ||||| |||||| ||||||||||    
T  39618481 agaaaacaacccctt-cagctattttgggctgactttttctcattccaaaaatgtcctcaattttcaataca 39618551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 29656377 - 29656452
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaata 353  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |  |||||||| || ||||||||| ||||||||    
T  29656377 atataaagaaaataacctctttcagctcttttgggctgactttttctctttccaaaactgccctcaattttcaata 29656452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 4505810 - 4505728
Alignment:
Q  196 tagtcaaatttgtttgagggtataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtatagataa 280  Q
    ||||||||| ||||| ||||||||| ||||  |||||| ||||| | |||||||||||  || ||||||||||||||||||||||    
T  4505810 tagtcaaatatgtttaagggtataactggaaatgaaaaagtcagcctaaaaccatgta--ttctctttatatatagtatagataa 4505728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 18417474 - 18417399
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||| |||||||||  |||||| |||||| ||||||||| |||||| || || ||||||||||    
T  18417474 atataaagaaaacaacccctttcagcttgtttgggatgactttttctttccaaaaatgctcttaattttcaataca 18417399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 375976 - 376034
Alignment:
Q  297 tctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||| |||||||||||||| |||||| || |||||||||||| ||| ||||||    
T  375976 tctttcagctattttgggctgactttttcttttcaaaaatgccctcaattttaaataca 376034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 23432100 - 23432027
Alignment:
Q  282 atagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||| |||  ||||| | |||||||||||| || ||||||| | |||||||||||| ||||||||||    
T  23432100 atagagaaaactacccatttcaacacttttgggctgaatttttctttcaaaaaatgccctcaattttcaataca 23432027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 7396047 - 7396103
Alignment:
Q  299 tttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||||| || ||||||||| |||||||||||| ||| ||||||    
T  7396047 tttcacctcttttgggctgaatttttctttccaaaaatgccctcaattttgaataca 7396103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 7438546 - 7438475
Alignment:
Q  281 tatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaat 352  Q
    |||| ||||||||||| ||||||||||||| | | ||  || ||||||||| |||||||||||| |||||||    
T  7438546 tataaagaaaacaacccctttcagctctttcgtgttggatttttctttccaaaaatgccctcaattttcaat 7438475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 16554577 - 16554501
Alignment:
Q  201 aaatttgtttgagggtataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtatagata 279  Q
    |||||||||| ||| |||||||||| ||||||   | |||||||||| ||| |  ||||||||||||||||||||||||    
T  16554577 aaatttgtttaaggatataattggaagtgaaatgataagtccaaaactatgaa--ttttctttatatatagtatagata 16554501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 7059128 - 7059205
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgac--ttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||| || ||||||||||||||||| ||||||  ||| |||||||| ||||| | |||| ||||||||||    
T  7059128 atataaagaaaataatctctttcagctcttttgagctgacttttcctctttccaaaaatgtcttcaattttcaataca 7059205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 12214873 - 12214799
Alignment:
Q  281 tatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||| ||||||| ||| |||||| | |||||||||||| || ||||||||| |||| ||||||| ||||| ||||    
T  12214873 tataaagaaaactacccctttcaacacttttgggctgaatttttctttccaaaaataccctcaattttcagtaca 12214799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 54856317 - 54856391
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct-tctttccataaatgccctcaaatttcaata 353  Q
    ||||| |||||| |||| | || |||||||| |||||||||| | |||||||| |||||||||||| ||||||||    
T  54856317 atataaagaaaataacccccttaagctctttcgggctgacttttctctttccaaaaatgccctcaattttcaata 54856391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 44469224 - 44469167
Alignment:
Q  298 ctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||| | |||||||||||| || ||||||||| |||| ||||||| ||||||||||    
T  44469224 ctttcaacacttttgggctgaatttttctttccaaaaataccctcaattttcaataca 44469167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 15849323 - 15849383
Alignment:
Q  295 cctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||||||||||||||   || |||||| || |||||||||||| ||| ||||||    
T  15849323 cctctttcagctcttttgggctagatttttcttttcaaaaatgccctcaattttgaataca 15849383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 23019688 - 23019615
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||| |||||||||  |||||| || ||  |||||| || |||||||| ||||||||||||||    
T  23019688 atataaagaaaacaacccctttcagct--tttgggttggctgtttcttttcaaaaatgcccacaaatttcaataca 23019615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 28588342 - 28588386
Alignment:
Q  122 aatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||| ||||| |||||||| ||||||||||||| ||||||||    
T  28588342 aatgataccaacaatataacaactataatataaatccttatcttt 28588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 35603439 - 35603362
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttc---tttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||| |||||||| || ||||||||||||||||| |||   |||||| ||||||| |||| ||||||||||    
T  35603439 atataaagaaaataacctcttccaactcttttgggctgactttttctcttttcca-aaatgccatcaattttcaataca 35603362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 50179097 - 50179153
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaat 336  Q
    ||||| ||||||| |||||||||||| |||||||| ||| || ||||||||| ||||    
T  50179097 atatacagaaaactacctctttcagcacttttgggttgaatttttctttccaaaaat 50179153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 17352872 - 17352946
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaat 352  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| |  |||||||| |||||||||||| |||||||    
T  17352872 atataaagaaaacaacccctttcacctcttttgggctgactttttctctttccaaaaatgccctcaattttcaat 17352946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 18625343 - 18625270
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    ||||| |||||||||| ||||||||||||||||| ||||||| ||||||||| ||| | |||||| ||| ||||    
T  18625343 atataaagaaaacaacatctttcagctcttttggactgactttttctttccaaaaacgtcctcaattttaaata 18625270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 14910161 - 14910086
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| |||||||||||| ||||||| |||| || |||||| || |||| ||||||| ||||||||||    
T  14910161 atataaagaaaactacctctttcagcacttttggactgaatttttcttttcaaaaataccctcaattttcaataca 14910086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 8866848 - 8866896
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  8866848 tttcaatgataccaacaatataacaaatataatataaattcttatcttt 8866896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 10459897 - 10459966
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||| | ||||||||||||||||| ||| ||| |||||| || ||||||| |||| ||| ||||||    
T  10459897 agaaaacaccatctttcagctcttttggactgtctttttctttacaaaaatgccatcaattttgaataca 10459966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 25056314 - 25056370
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaat 336  Q
    ||||| ||||| | ||||||||||| ||||||||||||| || ||||||||| ||||    
T  25056314 atataaagaaagctacctctttcagttcttttgggctgaatttttctttccaaaaat 25056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 28592392 - 28592437
Alignment:
Q  323 ttctttccataaatgccctcaaatttcaatacacgtgtaacaaataga 370  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||    
T  28592392 ttctttccaaaaatgccctcaattttcaataca--tgtaacaaataga 28592437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 35379643 - 35379718
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||||||| |||||||||||||||  || |||||| || || ||||||||| ||||||||||    
T  35379643 atataaagaaaacaacctcttttagctcttttgggctggatttttcttttcaaaattgccctcaattttcaataca 35379718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 611428 - 611505
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||| ||||||||||||||||||| ||||| |  ||||| || |||||||||||| ||||||||||    
T  611428 atataaagaaaacaacatctttcagctcttttgggccgactttttctcttttcaaaaatgccctcaattttcaataca 611505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 47410565 - 47410647
Alignment:
Q  196 tagtcaaatttgtttgagggtataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtatagataa 280  Q
    ||||||||||||||| |  ||||||||| | ||||||||| || |||||| | |||||  |||||||||||||||||||||||||    
T  47410565 tagtcaaatttgtttaattgtataattgaaagtgaaaatgacactccaaacctatgta--ttttctttatatatagtatagataa 47410647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 4578134 - 4578060
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct-tctttccataaatgccctcaaatttcaata 353  Q
    ||||| ||||||||| | |||||| ||||||||||||||||| | |||||||| |||| ||||||| ||||||||    
T  4578134 atataaagaaaacaatcactttcatctcttttgggctgacttttctctttccaaaaataccctcaattttcaata 4578060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 18956719 - 18956796
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttc--tttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||| |||||||||||||||||||||| |||| | |||  |||||| ||||||| |||| ||||||||||    
T  18956719 atataaagaaaataacctctttcagctcttttgggttgaccttttctatttccaaaaatgccatcaattttcaataca 18956796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 45643888 - 45643953
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaa 351  Q
    ||||||| || ||||||||||||||||| || |||| ||||||| | |||||||||||| ||||||    
T  45643888 agaaaacgacatctttcagctcttttggactaactttttctttctaaaaatgccctcaattttcaa 45643953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 49429632 - 49429591
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgactt 321  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  49429632 atataaagaaaacaacccctttcagctcttttgggctgactt 49429591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 5907610 - 5907534
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct-tctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||| ||||||||| |||||||| ||||| | ||||| || |||||| ||||||||| ||||||    
T  5907610 atataaagaaaacaacccctttcagcttttttgggccgacttttctcttttcaaaaatgctctcaaattttaataca 5907534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 15522251 - 15522302
Alignment:
Q  261 tttatatatagtatagataatatagagaaaacaacctctttcagctcttttgg 313  Q
    ||||||||||||||||||| |||| |||||| ||||| |||||||||||||||    
T  15522251 tttatatatagtatagata-tataaagaaaataacctgtttcagctcttttgg 15522302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 50585828 - 50585780
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    |||||| |||||||||| |||||||||||||||||||||  ||||||||    
T  50585828 tttcaaggatatcaacaatataacaaatataatataaatttttatcttt 50585780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 17439058 - 17438981
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgactt--cttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||| ||||||||| ||||||||||||||| |||  | |||||||| || | ||||||| ||||||||||    
T  17439058 atataaagaaaataacctcttttagctcttttgggctggctttacctctttccaaaattaccctcaattttcaataca 17438981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 7116337 - 7116366
Alignment:
Q  254 atttttctttatatatagtatagataatat 283  Q
    ||||||||||||||||||||||||||||||    
T  7116337 atttttctttatatatagtatagataatat 7116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 10436383 - 10436326
Alignment:
Q  296 ctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    ||||||| ||||||||||| ||||||  |||||||| ||||| |||||| ||||||||    
T  10436383 ctctttcggctcttttgggttgactttctctttccaaaaatgtcctcaattttcaata 10436326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 9773944 - 9773916
Alignment:
Q  256 ttttctttatatatagtatagataatata 284  Q
    |||||||||||||||||||||||||||||    
T  9773944 ttttctttatatatagtatagataatata 9773916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 23344654 - 23344694
Alignment:
Q  116 tatttcaatgatatcaacattataacaaatataatataaat 156  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  23344654 tatttcaatgatactaacaatataacaaatataatataaat 23344694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 26130354 - 26130425
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||| |||||||| |||||| | |||||| |  |||||||| ||||||| |||| ||||||||||    
T  26130354 agaaaacaacccctttcagcacttttgtgttgactttttctctttccaaaaatgccatcaattttcaataca 26130425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 35938632 - 35938700
Alignment:
Q  288 aaaacaacctctttcagctcttttgggctgacttct-tctttccataaatgccctcaaatttcaataca 355  Q
    |||| ||| ||||||| ||||||||||||||||| | |||||||| ||||||||| || ||| ||||||    
T  35938632 aaaataacttctttcaactcttttgggctgacttttctctttccaaaaatgcccttaattttaaataca 35938700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 47411004 - 47410956
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    |||||||||||||||||  ||||||| ||||||||||||  ||||||||    
T  47411004 tttcaatgatatcaacaacataacaattataatataaattcttatcttt 47410956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 47411140 - 47411092
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    |||||||||||||||||  ||||||| ||||||||||||  ||||||||    
T  47411140 tttcaatgatatcaacaacataacaattataatataaattcttatcttt 47411092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 1337 - 1263
Alignment:
Q  281 tatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||| |||||||||||  | |||||||||||||||||| || ||||||||| |||||||||||| ||| ||||||    
T  1337 tatatagaaaacaacccttctcagctcttttgggctgaatttttctttccaaaaatgccctcaattttgaataca 1263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 13998986 - 13999063
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||||| ||||||||||| ||||||||| ||||||| |  |||||||| || ||||||||| ||||||||||    
T  13998986 atatagagaaaataacctctttcaactcttttggactgactttttctctttccaaaagtgccctcaattttcaataca 13999063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 35695265 - 35695190
Alignment:
Q  200 caaatttgtttgagggtataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtataga 277  Q
    ||||||||||| |||||||||||||| ||||||| | ||| |||||||||| ||  ||| ||||||||||||||||||    
T  35695265 caaatttgtttaagggtataattggaagtgaaaaagccagcccaaaaccatata--tttcctttatatatagtataga 35695190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 4326733 - 4326662
Alignment:
Q  299 tttcagctcttttgggctgacttctt-ctttccataaatgccctcaaatttcaatacacgtgtaacaaatagat 371  Q
    |||||||||||||||||||| || || | ||||| |||||||||||| ||||||||||  ||||||||||||||    
T  4326733 tttcagctcttttgggctgaattttttcattccaaaaatgccctcaattttcaataca--tgtaacaaatagat 4326662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 8839605 - 8839673
Alignment:
Q  288 aaaacaacctctttcagctcttttgggct-gacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||||||||||||||||||| | |  || ||||||||| |||||| ||||| ||||||||||    
T  8839605 aaaacaacctctttcagctcttttgggttggtttttttctttccaaaaatgctctcaattttcaataca 8839673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 19929757 - 19929813
Alignment:
Q  299 tttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||||||||||||||||||||| |||||||||  |||||||||   ||||||||||    
T  19929757 tttcagctcttttgggctgactttttctttccaagaatgccctcggttttcaataca 19929813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 42097240 - 42097296
Alignment:
Q  299 tttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||||||||||||  |||||| |||||| || |||||||||||| ||||||||||    
T  42097240 tttcagctcttttggattgactttttcttttcaaaaatgccctcaattttcaataca 42097296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 42515934 - 42516001
Alignment:
Q  288 aaaacaacctctttcagctcttttgggctgacttct--tctttccataaatgccctcaaatttcaata 353  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||| ||||||| |||| ||| ||||    
T  42515934 aaaacaacctctttcagctcttttggactgactttttctctttccaaaaatgccatcaattttgaata 42516001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 5025418 - 5025493
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||| ||||||||||||||| | ||||||| |||||| || ||| ||| ||||  |||||||||    
T  5025418 atataaagaaaacaacatctttcagctcttttagactgactttttcttttcaaaaaagccatcaatgttcaataca 5025493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 35271891 - 35271966
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| |||| ||||||| |||||||||||| || ||||||||| |||| || | || ||||||||||    
T  35271891 atataaagaaaactacctttttcagcacttttgggctgaatttttctttccaaaaataccattaattttcaataca 35271966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 3860455 - 3860382
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    ||||| ||||||||||| |||||||| ||||||| ||| ||  ||||||  | |||||||||||| ||||||||    
T  3860455 atataaagaaaacaacccctttcagcacttttggactggctgtttctttttaaaaatgccctcaattttcaata 3860382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 17013784 - 17013852
Alignment:
Q  286 agaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    |||||| ||||  ||||| |||||||| | |||||| ||||||||| |||||||||||| ||||||||||    
T  17013784 agaaaataacccatttcaactcttttgagttgactt-ttctttccaaaaatgccctcaattttcaataca 17013852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 29686208 - 29686253
Alignment:
Q  121 caatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||||    
T  29686208 caatgacatcaacaatataacaaatataatataaattcttatcttt 29686253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 33628900 - 33628973
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaata 353  Q
    ||||| ||||||  |||||||||||  ||||||||||||  | ||||||||| |||| ||||||| ||||||||    
T  33628900 atataaagaaaattacctctttcagaacttttgggctgaaattttctttccaaaaataccctcaattttcaata 33628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 29663490 - 29663442
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaatcattatcttt 166  Q
    ||||||||| | ||||| ||||||||||||||||||||| || ||||||    
T  29663490 tttcaatgacaccaacaatataacaaatataatataaattataatcttt 29663442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 5879909 - 5879984
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||||||||||||||||| | |||| || ||||||| | ||||| ||| || ||||||||||    
T  5879909 atataaagaaaacaacctctttcagctcttttagactgaatttttctttcaaaaaatgtccttaattttcaataca 5879984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 10552706 - 10552744
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctga 318  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  10552706 atataaagaaaacaaactctttcagctcttttgggctga 10552744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 22882259 - 22882182
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgac--ttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| |||||||||||||||||||||||||||| || ||  ||  |||||| | ||||| |||||| ||||||||||    
T  22882259 atataaagaaaacaacctctttcagctcttttggacttacattttctctttcaaaaaatgtcctcaattttcaataca 22882182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Original strand, 35193680 - 35193710
Alignment:
Q  256 ttttctttatatatagtatagataatataga 286  Q
    |||||||||||||||||||||||||||||||    
T  35193680 ttttctttatatatagtatagataatataga 35193710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 35468813 - 35468775
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataaat 156  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  35468813 tttcaatgatatcaacaatataataaatataatataaat 35468775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 36802032 - 36802085
Alignment:
Q  299 tttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaat 352  Q
    |||||||| ||||||| | | || ||||||||| ||||||||||||||||||||    
T  36802032 tttcagcttttttgggttaaatttttctttccaaaaatgccctcaaatttcaat 36802085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 1110819 - 1110897
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgac---ttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||| || ||||||||||||||||||||| |   || ||||||||| ||||| | |||| ||||||||||    
T  1110819 atataaagaaaacgacatctttcagctcttttgggctgccttttttttctttccaaaaatgtcatcaattttcaataca 1110897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 15248909 - 15248982
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||| |||||||||  |||||| || ||  |||||| || |||||||| ||||||||||||||    
T  15248909 atataaagaaaacaacccctttcagct--tttgggttggctgtttcttttcaaaaatgcccacaaatttcaataca 15248982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 33677039 - 33676963
Alignment:
Q  280 atatagagaaaacaacctctttcagctcttttgggctgacttcttctttccataaa-tgccctcaaatttcaataca 355  Q
    ||||| ||||||||||  |||| |||||||||| ||| |||| |||||| || ||| ||||||||| ||||||||||    
T  33677039 atataaagaaaacaactcctttaagctcttttgagcttactttttcttttcaaaaaatgccctcaattttcaataca 33676963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 38502249 - 38502174
Alignment:
Q  202 aatttgtttgagggtataattggatgtgaaaatgtcagtccaaaaccatgtaatttttctttatatatagtatagataa 280  Q
    |||||||||  ||| |||| |||| ||||||| | ||| |||||||||||||   || |||||||||||||||||||||    
T  38502249 aatttgtttatgggcataactggaagtgaaaaagccagcccaaaaccatgta---ttcctttatatatagtatagataa 38502174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 43709839 - 43709784
Alignment:
Q  299 tttcagctcttttgggctgacttcttctttccataaatgccctcaaatttcaataca 355  Q
    ||||| ||||||||||||||||| |||||| || |||||||||||| ||| ||||||    
T  43709839 tttcaactcttttgggctgactttttcttt-caaaaatgccctcaattttgaataca 43709784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 36501 - 36537
Alignment:
Q  118 tttcaatgatatcaacattataacaaatataatataa 154  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  36501 tttcaatgataccaacaatataacaaatataatataa 36537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University