View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_26 (Length: 363)

Name: NF5076_low_26
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_26
NF5076_low_26
[»] chr1 (4 HSPs)
chr1 (132-356)||(2635247-2635471)
chr1 (251-344)||(23973459-23973553)
chr1 (266-343)||(11238020-11238098)
chr1 (268-304)||(16182874-16182910)
[»] chr2 (3 HSPs)
chr2 (255-317)||(5029081-5029143)
chr2 (251-304)||(34107339-34107392)
chr2 (256-304)||(29713071-29713119)
[»] chr8 (5 HSPs)
chr8 (266-319)||(35779803-35779856)
chr8 (251-319)||(220339-220407)
chr8 (251-319)||(689494-689562)
chr8 (251-319)||(733962-734030)
chr8 (251-319)||(857858-857926)
[»] chr6 (1 HSPs)
chr6 (268-343)||(180161-180237)
[»] chr4 (4 HSPs)
chr4 (267-319)||(6202653-6202705)
chr4 (252-343)||(12585537-12585629)
chr4 (251-319)||(15507596-15507664)
chr4 (251-319)||(35230272-35230340)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 132 - 356
Target Start/End: Complemental strand, 2635471 - 2635247
Alignment:
Q  132 gattaagtacatacacgagtggacaaataaaccgacaaataagcaattttggctctaaataatttacaaagaggtcagcataaaatttcaatattggatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2635471 gattaagtacatacacgagtggacaaataaaccgacaaataagcaattttggctctaaaaaatttacaaagaggtcagcataaaatttcaatattggatt 2635372  T
Q  232 gtcacaannnnnnnnnncttcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaacccgacccttacgta 331  Q
    |||||||          ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2635371 gtcacaattttttttttcttcaagtagtctagtagttagaatttatatttttcaagataaataagtagggtgtatgagattcgaacccgacccttacata 2635272  T
Q  332 tcataatgcatgcaccttcatctca 356  Q
    | |||||||||||||||||| ||||    
T  2635271 taataatgcatgcaccttcagctca 2635247  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 23973459 - 23973553
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaa-cccgacccttacgtatcataatgcatgc 344  Q
    ||||||||||| || ||||||||||| |||||||||  | ||||||| ||||||||| | |||||| ||| |||||| | ||| |||||||||||    
T  23973459 tcaagtagtctagtggctagaattcacatttttcaacgtgaataagtggggtgtacggggttcgaatcccaacccttgcatataataatgcatgc 23973553  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 11238020 - 11238098
Alignment:
Q  266 gctagaattcatatttttcaagataaataagtagggtgtacgagattcgaa-cccgacccttacgtatcataatgcatg 343  Q
    |||||||||||  ||||||||||| ||||||| |||||| || |||||||| |||||||| | | ||| ||||||||||    
T  11238020 gctagaattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcatg 11238098  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 16182910 - 16182874
Alignment:
Q  268 tagaattcatatttttcaagataaataagtagggtgt 304  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  16182910 tagaattcatatttttcaagatgaataagtggggtgt 16182874  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 5029081 - 5029143
Alignment:
Q  255 gtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaac 317  Q
    ||||||| || | |||||||||| ||||||||| | ||||||| |||||| ||||||||||||    
T  5029081 gtagtctagtgggtagaattcatctttttcaaggtgaataagtggggtgttcgagattcgaac 5029143  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 34107392 - 34107339
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgt 304  Q
    ||||||||||| || ||||||||||| |||||||||| | ||||||| ||||||    
T  34107392 tcaagtagtctagtggctagaattcacatttttcaaggtgaataagtggggtgt 34107339  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 29713071 - 29713119
Alignment:
Q  256 tagtctggtagctagaattcatatttttcaagataaataagtagggtgt 304  Q
    |||||| || |||||||||||| ||||| ||| ||||||||||||||||    
T  29713071 tagtctagtggctagaattcatcttttttaaggtaaataagtagggtgt 29713119  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 35779856 - 35779803
Alignment:
Q  266 gctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    |||||||||||| ||||||||||| ||||||| |||||| | || |||||||||    
T  35779856 gctagaattcatctttttcaagatgaataagtggggtgtcctaggttcgaaccc 35779803  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 220339 - 220407
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||| || | |||||||||  ||||||||| | ||||||| |||||| || |||||||||||    
T  220339 tcaagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccc 220407  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 689494 - 689562
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||| || | |||||||||  ||||||||| | ||||||| |||||| || |||||||||||    
T  689494 tcaagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccc 689562  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 733962 - 734030
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||| || | |||||||||  ||||||||| | ||||||| |||||| || |||||||||||    
T  733962 tcaagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccc 734030  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 857858 - 857926
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||| || | |||||||||  ||||||||| | ||||||| |||||| || |||||||||||    
T  857858 tcaagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccc 857926  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 180161 - 180237
Alignment:
Q  268 tagaattcatatttttcaagataaataagtagggtgtacgagattcgaa-cccgacccttacgtatcataatgcatg 343  Q
    |||||||||| ||||||||||| ||||||| ||||||  |  ||||||| ||||||||| || ||| ||||||||||    
T  180161 tagaattcatctttttcaagattaataagtggggtgtttggaattcgaatcccgaccctcacatataataatgcatg 180237  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 6202705 - 6202653
Alignment:
Q  267 ctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||  ||||||||||| |||||||||||||| || | |||||||||    
T  6202705 ctagaattcacctttttcaagatgaataagtagggtgtccggggttcgaaccc 6202653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 12585537 - 12585629
Alignment:
Q  252 caagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaac-ccgacccttacgtatcataatgcatg 343  Q
    |||||||||| || |||||||||||  ||||||||||| |||||||  ||||| || | ||||||| ||| ||||||| ||| | ||||||||    
T  12585537 caagtagtctagtggctagaattcacctttttcaagatgaataagtgaggtgttcggggttcgaactccggcccttacatataacaatgcatg 12585629  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 15507664 - 15507596
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    |||||||||||  | |||||||||||||||||||||  ||||| ||| |||||| || | |||||||||    
T  15507664 tcaagtagtctaatggctagaattcatatttttcaaagtaaattagtggggtgttcggggttcgaaccc 15507596  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 35230272 - 35230340
Alignment:
Q  251 tcaagtagtctggtagctagaattcatatttttcaagataaataagtagggtgtacgagattcgaaccc 319  Q
    ||||||||||| || |||| ||||||  | ||||||| ||||||||| |||||| |||| |||||||||    
T  35230272 tcaagtagtctagtggctaaaattcacctatttcaaggtaaataagtggggtgtccgaggttcgaaccc 35230340  T

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