View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_27 (Length: 350)

Name: NF5076_low_27
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_27
NF5076_low_27
[»] chr4 (25 HSPs)
chr4 (1-143)||(32858140-32858281)
chr4 (231-331)||(32858369-32858469)
chr4 (234-317)||(43739511-43739595)
chr4 (230-292)||(50729519-50729582)
chr4 (231-288)||(37859240-37859298)
chr4 (230-289)||(9947975-9948035)
chr4 (234-292)||(3649686-3649745)
chr4 (230-292)||(52673857-52673920)
chr4 (234-268)||(21098584-21098618)
chr4 (234-272)||(21202789-21202827)
chr4 (233-270)||(22318384-22318421)
chr4 (234-270)||(4325841-4325877)
chr4 (234-270)||(6776628-6776664)
chr4 (230-270)||(7554957-7554997)
chr4 (230-270)||(12600932-12600972)
chr4 (234-270)||(16320569-16320605)
chr4 (230-270)||(21580072-21580112)
chr4 (234-270)||(23521930-23521966)
chr4 (234-270)||(28115302-28115338)
chr4 (234-270)||(33177032-33177068)
chr4 (234-270)||(37931970-37932006)
chr4 (233-292)||(38486234-38486294)
chr4 (234-270)||(38812570-38812606)
chr4 (234-270)||(47361413-47361449)
chr4 (234-270)||(55065333-55065369)
[»] chr1 (19 HSPs)
chr1 (231-275)||(35335958-35336002)
chr1 (234-274)||(504469-504509)
chr1 (237-292)||(6771427-6771483)
chr1 (234-270)||(16451183-16451219)
chr1 (234-292)||(6029360-6029419)
chr1 (231-270)||(13994157-13994196)
chr1 (234-292)||(45490934-45490993)
chr1 (234-270)||(1351517-1351553)
chr1 (234-270)||(1601229-1601265)
chr1 (231-275)||(3560227-3560271)
chr1 (283-315)||(6771497-6771529)
chr1 (234-270)||(16437418-16437454)
chr1 (234-270)||(25539911-25539947)
chr1 (231-290)||(26733608-26733668)
chr1 (234-270)||(31004188-31004224)
chr1 (230-270)||(41967931-41967971)
chr1 (234-270)||(42510581-42510617)
chr1 (234-270)||(45658877-45658913)
chr1 (234-270)||(51264551-51264587)
[»] chr3 (15 HSPs)
chr3 (231-292)||(14155439-14155500)
chr3 (230-270)||(50678842-50678882)
chr3 (230-271)||(42547370-42547411)
chr3 (230-270)||(21221361-21221401)
chr3 (234-270)||(39052839-39052875)
chr3 (234-279)||(45871453-45871500)
chr3 (230-292)||(19906806-19906869)
chr3 (230-292)||(25860399-25860462)
chr3 (234-290)||(49748891-49748948)
chr3 (230-270)||(1344708-1344748)
chr3 (234-270)||(21373978-21374014)
chr3 (234-270)||(28675838-28675874)
chr3 (234-270)||(29584923-29584959)
chr3 (234-270)||(38213402-38213438)
chr3 (234-270)||(51925209-51925245)
[»] chr8 (12 HSPs)
chr8 (238-289)||(10932787-10932838)
chr8 (234-315)||(32303561-32303643)
chr8 (230-270)||(6386619-6386659)
chr8 (230-270)||(37618414-37618454)
chr8 (230-292)||(7394813-7394876)
chr8 (234-292)||(17520642-17520700)
chr8 (234-270)||(8673077-8673113)
chr8 (230-270)||(10656708-10656748)
chr8 (234-270)||(15001513-15001549)
chr8 (234-270)||(29563248-29563284)
chr8 (234-270)||(29672345-29672381)
chr8 (230-274)||(36426265-36426309)
[»] chr7 (13 HSPs)
chr7 (234-290)||(8360603-8360660)
chr7 (230-270)||(17237123-17237163)
chr7 (237-317)||(35645501-35645581)
chr7 (230-270)||(47316706-47316746)
chr7 (234-292)||(11822274-11822333)
chr7 (239-292)||(29372764-29372818)
chr7 (234-270)||(1870186-1870222)
chr7 (234-270)||(11250668-11250704)
chr7 (234-270)||(21784922-21784958)
chr7 (234-270)||(23349299-23349335)
chr7 (234-270)||(30849254-30849290)
chr7 (230-270)||(32873777-32873817)
chr7 (237-292)||(43189227-43189283)
[»] chr2 (21 HSPs)
chr2 (230-291)||(30326317-30326378)
chr2 (230-270)||(4641559-4641599)
chr2 (230-270)||(40832476-40832516)
chr2 (230-270)||(44284672-44284712)
chr2 (235-270)||(83315-83350)
chr2 (235-270)||(8112348-8112383)
chr2 (231-270)||(10399877-10399916)
chr2 (231-270)||(18126995-18127034)
chr2 (281-315)||(25383255-25383289)
chr2 (234-315)||(37003829-37003911)
chr2 (230-279)||(38786528-38786576)
chr2 (230-270)||(7258940-7258980)
chr2 (230-270)||(7761580-7761620)
chr2 (234-270)||(9732937-9732973)
chr2 (230-270)||(16104317-16104357)
chr2 (230-270)||(16177890-16177930)
chr2 (234-270)||(18685883-18685919)
chr2 (234-270)||(37308702-37308738)
chr2 (230-270)||(41366117-41366157)
chr2 (234-270)||(42706406-42706442)
chr2 (234-270)||(45463117-45463153)
[»] chr6 (16 HSPs)
chr6 (230-290)||(7396151-7396211)
chr6 (230-270)||(10324157-10324197)
chr6 (230-270)||(11279171-11279211)
chr6 (237-292)||(24785105-24785161)
chr6 (234-273)||(8342636-8342675)
chr6 (234-292)||(18597181-18597240)
chr6 (230-292)||(29054399-29054462)
chr6 (234-284)||(4064325-4064375)
chr6 (230-292)||(11382107-11382168)
chr6 (231-289)||(29202952-29203012)
chr6 (234-270)||(166969-167005)
chr6 (234-270)||(1004472-1004508)
chr6 (231-259)||(2122767-2122795)
chr6 (234-270)||(3932853-3932889)
chr6 (234-270)||(14808047-14808083)
chr6 (234-270)||(31870146-31870182)
[»] chr5 (11 HSPs)
chr5 (234-270)||(553444-553480)
chr5 (230-270)||(41790475-41790515)
chr5 (230-262)||(700622-700654)
chr5 (234-270)||(4689711-4689747)
chr5 (234-270)||(5571657-5571693)
chr5 (234-270)||(5673186-5673222)
chr5 (234-270)||(6284311-6284347)
chr5 (230-270)||(7208243-7208283)
chr5 (234-270)||(8136884-8136920)
chr5 (234-270)||(32528762-32528798)
chr5 (230-270)||(39918550-39918590)
[»] scaffold0650 (1 HSPs)
scaffold0650 (234-292)||(1633-1692)
[»] scaffold0595 (1 HSPs)
scaffold0595 (234-273)||(6928-6967)
[»] scaffold0729 (1 HSPs)
scaffold0729 (234-270)||(4592-4628)
[»] scaffold0360 (1 HSPs)
scaffold0360 (234-270)||(15394-15430)
[»] scaffold0169 (2 HSPs)
scaffold0169 (234-270)||(12549-12585)
scaffold0169 (234-270)||(18067-18103)
[»] scaffold0027 (1 HSPs)
scaffold0027 (230-270)||(15215-15255)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 32858140 - 32858281
Alignment:
Q  1 aaagaaacaataggaatactcatgacttaaaaagctcataaaatatttgtacnnnnnnngctcttgaaaaatcacattgattgataaaagatagatgtaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||    
T  32858140 aaagaaacaataggaatactcatgacttaaaa-gctcataaaatatttgcacaaaaaaaactcttgaaaaatcacattgattgataaaagatagatgtaa 32858238  T
Q  101 tgtgtataaggtgtgtttgaagcaccaaacagaataacacatg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32858239 tgtgtataaggtgtgtttgaagcaccaaacagaataacacatg 32858281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 32858369 - 32858469
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccctaaagcagttttataaatcaaacattgtataattgaaat 330  Q
    |||||||||||||| |||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  32858369 tgagacaaaaagttatgttatggtttagtgagggacaaaattttaatttgtgttatgtccctaaagcagttttataaatcaaacattgtacaattgaaat 32858468  T
Q  331 t 331  Q
    |    
T  32858469 t 32858469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 43739511 - 43739595
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtccctaaagcagttttataaatcaaacatt 317  Q
    ||||||| ||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||| || |||||||| ||||||||||||    
T  43739511 gacaaaatgttgtgttgtggtttggtgagggacaataatttcagtttttgtcatgtccctcaaacagttttacaaatcaaacatt 43739595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 50729582 - 50729519
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||||||||||    
T  50729582 gtgagacaaaaagttgtgctgtggtttggtgatagacaaaaatttcagtttttgtcatgtccct 50729519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 37859298 - 37859240
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaa-ttttagtttgtgtcatgt 288  Q
    ||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||    
T  37859298 tgagacaaaaagttgtgttatggtttattgagagataaaatttttagtttttgtcatgt 37859240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 9947975 - 9948035
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtc 289  Q
    |||||||||||||||||  |||||||||||||| || || ||||||||||| |||||||||    
T  9947975 gtgagacaaaaagttgtaatgtggtttagtgagggataagaattttagtttttgtcatgtc 9948035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 3649686 - 3649745
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  3649686 gacaaaaagttgtgctgtggtttggtgagggacaaaaattttagtttttgtcctgtccct 3649745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 52673857 - 52673920
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||| |||||||| ||||||||||| ||| |||||||  |||| ||||||||||||    
T  52673857 gtgagacaaaaaattgtgttgaggtttagtgagggacaaaaatttctgtttttgtcatgtccct 52673920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 21098584 - 21098618
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaa 268  Q
    ||||||||||| |||||||||||||||||||||||    
T  21098584 gacaaaaagttatgttgtggtttagtgagagacaa 21098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 21202789 - 21202827
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaatt 272  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  21202789 gacaaaaagttgtgttgtggtttggtgagggacaaaatt 21202827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 22318421 - 22318384
Alignment:
Q  233 agacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  22318421 agacaaaaagttgtgttgtggtttggtgagggacaaaa 22318384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 4325841 - 4325877
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4325841 gacaaaaagttgtgttgcggttttgtgagagacaaaa 4325877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 6776628 - 6776664
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  6776628 gacaaaaagttgtgttgtggtttggtgagggacaaaa 6776664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 7554997 - 7554957
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  7554997 gtgagacaaaaagttgtgttatggtttagtgaaggacaaaa 7554957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 12600932 - 12600972
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  12600932 gtgagacaaaaagttgtgttgtggtttgatgagggacaaaa 12600972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 16320569 - 16320605
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  16320569 gacaaaaagttgtgttgtggtttggtgagggacaaaa 16320605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 21580072 - 21580112
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  21580072 gtgagacaaaaagttgtgatgtggtttggtgagggacaaaa 21580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 23521930 - 23521966
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  23521930 gacaaaaagttgtgttgtggtttggtgagggacaaaa 23521966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 28115302 - 28115338
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28115302 gacaaaaagttgtgttgtggtttggtgagggacaaaa 28115338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 33177068 - 33177032
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  33177068 gacaaaaagttgtgttgtggtttggtgagggacaaaa 33177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 37931970 - 37932006
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  37931970 gacaaaaagttgtgttgtggtttggtgagggacaaaa 37932006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 38486294 - 38486234
Alignment:
Q  233 agacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||| |||||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  38486294 agacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcatgtccct 38486234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 38812570 - 38812606
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  38812570 gacaaaaagttgtgttgtggtttggtgagggacaaaa 38812606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 47361449 - 47361413
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  47361449 gacaaaaagttgtgttgtggtttggtgagggacaaaa 47361413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 55065369 - 55065333
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  55065369 gacaaaaagttgtgttgtggtttggtgagggacaaaa 55065333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 35336002 - 35335958
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaatttta 275  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  35336002 tgagacaaaaagttgtgttgtgctttagtgagagacaaaatttta 35335958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 504509 - 504469
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaatttt 274  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  504509 gacaaaaaattgtgttatggtttagtgagagacaaaatttt 504469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 6771427 - 6771483
Alignment:
Q  237 aaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| |||| |||||||    
T  6771427 aaaaagttgtgttgtgatttagtgagtgacaagaattttagtttttgtcttgtccct 6771483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 16451183 - 16451219
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| |||||||||||||    
T  16451183 gacaaaaagttgtgttgtggtttggtgagagacaaaa 16451219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 6029419 - 6029360
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||| |||||||    
T  6029419 gacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctgtccct 6029360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 13994196 - 13994157
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  13994196 tgagacaaaaagttgtgttgtggtttggtgagggacaaaa 13994157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 45490993 - 45490934
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  45490993 gacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtccct 45490934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 1351553 - 1351517
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  1351553 gacaaaaagttgtgttgtggtttggtgagggacaaaa 1351517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 1601229 - 1601265
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  1601229 gacaaaaagttgtgttgtggtttggtgagggacaaaa 1601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 3560271 - 3560227
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaatttta 275  Q
    ||||| ||||||||||||||||||||||| || ||||||| ||||    
T  3560271 tgagataaaaagttgtgttgtggtttagtaagggacaaaacttta 3560227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 6771497 - 6771529
Alignment:
Q  283 tcatgtccctaaagcagttttataaatcaaaca 315  Q
    ||||||||||||| |||||||||||||||||||    
T  6771497 tcatgtccctaaaacagttttataaatcaaaca 6771529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 16437418 - 16437454
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  16437418 gacaaaaagttgtgttgtggtttggtgagggacaaaa 16437454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 25539911 - 25539947
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  25539911 gacaaaaagttgtgttgtggtttggtgagggacaaaa 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 26733608 - 26733668
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtcc 290  Q
    |||| |||||||||||||| |||||||||| | ||||| ||||| ||||| ||||||||||    
T  26733608 tgaggcaaaaagttgtgttatggtttagtgggggacaagaatttcagtttttgtcatgtcc 26733668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 31004188 - 31004224
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  31004188 gacaaaaagttgtgttgtggtttggtgagggacaaaa 31004224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41967971 - 41967931
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  41967971 gtgagacaaaaagttgtgttgtggtttggtaagggacaaaa 41967931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 42510581 - 42510617
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||| |||||||| |||||||||||||    
T  42510581 gacaaaaagttgtgctgtggtttggtgagagacaaaa 42510617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 45658877 - 45658913
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  45658877 gacaaaaagttgtgttgtggtttggtgagcgacaaaa 45658913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 51264551 - 51264587
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  51264551 gacaaaaagttgtgttgtggtttggtgagggacaaaa 51264587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 14155500 - 14155439
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||| || ||||||||| || ||||||| ||||| ||||||||||||    
T  14155500 tgagacaaaaagttgtgttatgatttagtgagggataaaatttcagtttttgtcatgtccct 14155439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 50678842 - 50678882
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  50678842 gtgagacaaaaagttgtgttgtggtttggtgagagacaaaa 50678882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 42547411 - 42547370
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaat 271  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  42547411 gtgagacaaaaagttgtgttgtagtttagtaagagacaaaat 42547370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 21221401 - 21221361
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  21221401 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 21221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 39052875 - 39052839
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39052875 gacaaaaagttgtgttgtggtttggtgagagacaaaa 39052839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 45871453 - 45871500
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagaca--aaattttagttt 279  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||    
T  45871453 gacaaaaagttgtgttgtggtttagttagagacaataaattttagttt 45871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 19906806 - 19906869
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||| ||||| |||| |||||||    
T  19906806 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtccct 19906869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 25860462 - 25860399
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  25860462 gtgagacaaaaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcatgtccct 25860399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 49748948 - 49748891
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtcc 290  Q
    ||||||||||||||||||||||| ||||| ||| ||||| | ||||| ||||||||||    
T  49748948 gacaaaaagttgtgttgtggtttggtgagggacaaaaatatcagtttttgtcatgtcc 49748891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 1344748 - 1344708
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  1344748 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 1344708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 21373978 - 21374014
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  21373978 gacaaaaagttgtgttgtggtttggtgagggacaaaa 21374014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 28675838 - 28675874
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28675838 gacaaaaagttgtgttgtggtttggtgagggacaaaa 28675874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 29584923 - 29584959
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  29584923 gacaaaaagttgtgttgtggtttggtgagggacaaaa 29584959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 38213402 - 38213438
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  38213402 gacaaaaagttgtgttgtggtttcgtgagtgacaaaa 38213438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 51925245 - 51925209
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  51925245 gacaaaaagttgtgttgtggtttggtgagggacaaaa 51925209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 10932787 - 10932838
Alignment:
Q  238 aaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtc 289  Q
    |||||||||| |||||||||||||| |||||||||||||||| | |||||||    
T  10932787 aaaagttgtgatgtggtttagtgagggacaaaattttagtttttatcatgtc 10932838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 32303643 - 32303561
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccctaaagcagttttataaatcaaaca 315  Q
    ||||||||||||||||||||||| ||||| ||| ||||| | ||||| |||| ||| ||| || |||||||| ||||||||||    
T  32303643 gacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtacctgaaacagttttacaaatcaaaca 32303561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 6386619 - 6386659
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  6386619 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 6386659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 37618454 - 37618414
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  37618454 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 37618414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 7394876 - 7394813
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||||| |||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  7394876 gtgagacaaaaagttgtgttatggtttggtgagggacaaaaatatgagtttttgtcatgtccct 7394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 17520642 - 17520700
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||| ||||| |||||||| | ||||| || | |||||||    
T  17520642 gacaaaaagttgtgttgtggtttggtgagggacaaaatataagtttttgccctgtccct 17520700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 8673113 - 8673077
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  8673113 gacaaaaagttgtgttgtggtttggtgagggacaaaa 8673077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 10656748 - 10656708
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||  |||||||    
T  10656748 gtgagacaaaaagttgtgttgtggttttgtgaaggacaaaa 10656708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 15001513 - 15001549
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  15001513 gacaaaaagttgtgttgtggtttggtgagggacaaaa 15001549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 29563284 - 29563248
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  29563284 gacaaaaagttgtgttgtggtttggtgagggacaaaa 29563248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 29672381 - 29672345
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  29672381 gacaaaaagttgtgttgtggtttggtgagggacaaaa 29672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 36426309 - 36426265
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaatttt 274  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||    
T  36426309 gtgagacaaaaagatgtgttgtggtttagtaaatgacaaaatttt 36426265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 8360603 - 8360660
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtcc 290  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| ||| ||||||||||    
T  8360603 gacaaaaagttgtgatgtggtttagtgtgagacaagaattttattttttgtcatgtcc 8360660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 17237123 - 17237163
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  17237123 gtgagacaaaaagttgtgttgtggtttagtgaatgacaaaa 17237163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 35645501 - 35645581
Alignment:
Q  237 aaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccctaaagcagttttataaatcaaacatt 317  Q
    |||||||||||||||||||||||||| ||| | | || ||||| |||| ||||| ||||  | ||||| ||||||||||||    
T  35645501 aaaaagttgtgttgtggtttagtgagggacgagaattcagtttttgtcttgtccttaaaataattttacaaatcaaacatt 35645581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 47316746 - 47316706
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  47316746 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 47316706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 11822274 - 11822333
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||||||||  ||| ||||| | ||||| ||||||||||||    
T  11822274 gacaaaaagttgtgttgtggtttagtgaaggacaaaaatatgagtttttgtcatgtccct 11822333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 29372818 - 29372764
Alignment:
Q  239 aaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||||||||  ||| ||||||||||||| |||| |||||||    
T  29372818 aaagttgtgttgtggtttagtgacggacaaaaattttagtttttgtcgtgtccct 29372764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 1870186 - 1870222
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  1870186 gacaaaaagttgtgttgtggtttggtgagggacaaaa 1870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 11250668 - 11250704
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  11250668 gacaaaaagttgtgttgtggtttggtgagggacaaaa 11250704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 21784922 - 21784958
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  21784922 gacaaaaagttgtgttgtggtttggtgagggacaaaa 21784958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 23349335 - 23349299
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  23349335 gacaaaaagttgtgttgtggtttggtgagggacaaaa 23349299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 30849290 - 30849254
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  30849290 gacaaaaagttgtgttgtggtttggtgagggacaaaa 30849254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 32873817 - 32873777
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||  |||||||    
T  32873817 gtgagacaaaaagttgtgttgtggtttggtgaaggacaaaa 32873777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 43189283 - 43189227
Alignment:
Q  237 aaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  43189283 aaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtccct 43189227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 30326378 - 30326317
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccc 291  Q
    |||||||||||||||||| |||||||| | |||||||||||| | ||||| |||| ||||||    
T  30326378 gtgagacaaaaagttgtgctgtggtttggcgagagacaaaatatgagtttttgtcctgtccc 30326317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 4641559 - 4641599
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  4641559 gtgagacaaaaagttgtgctgtggtttggtgagagacaaaa 4641599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 40832516 - 40832476
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  40832516 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 40832476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 44284672 - 44284712
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  44284672 gtgagacaaaaagttgtgctgtggtttagtgagggacaaaa 44284712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 83315 - 83350
Alignment:
Q  235 acaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||| ||||||||||||||||||||    
T  83315 acaaaaagttgtgttatggtttagtgagagacaaaa 83350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 8112348 - 8112383
Alignment:
Q  235 acaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||| |||||||||||||    
T  8112348 acaaaaagttgtgttgtggtttggtgagagacaaaa 8112383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 10399916 - 10399877
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  10399916 tgagacaaaaagttgtgttgtggtttagtgaaggacaaaa 10399877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 18127034 - 18126995
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  18127034 tgagacaaaaagttgtgttgtggtttaatgatagacaaaa 18126995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 25383255 - 25383289
Alignment:
Q  281 tgtcatgtccctaaagcagttttataaatcaaaca 315  Q
    |||| ||||||||||||||||||||||||||||||    
T  25383255 tgtcctgtccctaaagcagttttataaatcaaaca 25383289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 37003911 - 37003829
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccctaaagcagttttataaatcaaaca 315  Q
    ||||||||||||||||||||||| ||||| ||| ||||| | ||||| ||| |||| ||| || ||| |||| ||||||||||    
T  37003911 gacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgttatgtacctgaaacagatttacaaatcaaaca 37003829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 38786576 - 38786528
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagttt 279  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||| |||||    
T  38786576 gtgagacaaaatgttgtgttttggtttagtgagaga-aaaatttcagttt 38786528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 7258940 - 7258980
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  7258940 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 7258980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 7761620 - 7761580
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  7761620 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 7761580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 9732973 - 9732937
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  9732973 gacaaaaagttgtgttgtggtttggtgagggacaaaa 9732937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 16104317 - 16104357
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  16104317 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 16104357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 16177930 - 16177890
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  16177930 gtgagacaaaaagttgtgttgtggtttggtaagcgacaaaa 16177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 18685883 - 18685919
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||| |||||||| |||||||||||||    
T  18685883 gacaaaaagttgtgctgtggtttggtgagagacaaaa 18685919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 37308702 - 37308738
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  37308702 gacaaaaagttgtgttgtggtttggtgagggacaaaa 37308738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41366157 - 41366117
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||| |||||||||||||| ||||| |||||||    
T  41366157 gtgagacaaaaaattgtgttgtggtttggtgagggacaaaa 41366117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 42706406 - 42706442
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  42706406 gacaaaaagttgtgttgtggtttggtgagggacaaaa 42706442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 45463153 - 45463117
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  45463153 gacaaaaagttgtgttgtggtttggtgagtgacaaaa 45463117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 7396211 - 7396151
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtcc 290  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||  |||| |||| |||||    
T  7396211 gtgagacaaaaagttgtgtagtggtttagtgagggacaagatttctgtttttgtcctgtcc 7396151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 10324197 - 10324157
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  10324197 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 10324157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 11279171 - 11279211
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  11279171 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 11279211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 24785105 - 24785161
Alignment:
Q  237 aaaaagttgtgttgtggtttagtgagagacaa-aattttagtttgtgtcatgtccct 292  Q
    ||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||    
T  24785105 aaaaaattgtgttgtggtttagtgagcgacaagaatttcagtttttgtcatgtccct 24785161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 8342675 - 8342636
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaattt 273  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  8342675 gacaaaaagttgtgttgtggtttattgagtgacaaaattt 8342636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 18597240 - 18597181
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| || || ||||||||||||    
T  18597240 gacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagattttgtcatgtccct 18597181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 29054399 - 29054462
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    |||||||||||||||||| |||||||| | ||| ||| |||||| |||||| ||||||||||||    
T  29054399 gtgagacaaaaagttgtgctgtggtttggcgagggacaaaaattgtagtttttgtcatgtccct 29054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 4064325 - 4064375
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtc 284  Q
    |||||||| |||||| || ||||||| ||||||||||||||||||| ||||    
T  4064325 gacaaaaatttgtgtcgtagtttagtaagagacaaaattttagtttttgtc 4064375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 11382107 - 11382168
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||||||| |||||| | ||||| | ||||| |||| |||||||    
T  11382107 gtgagacaaaaagttgtgttgtggtttggtgagaca-aaaatatgagtttttgtcctgtccct 11382168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 29203012 - 29202952
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagtgagagacaaa--attttagtttgtgtcatgtc 289  Q
    ||||| ||||||||||||||||| ||||||| |||||||   ||||||||| |||||||||    
T  29203012 tgagagaaaaagttgtgttgtggattagtgaaagacaaatttttttagtttttgtcatgtc 29202952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 167005 - 166969
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  167005 gacaaaaagttgtgttgtggtttggtgagggacaaaa 166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 1004508 - 1004472
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||||||||| |||| |||||||    
T  1004508 gacaaaaagttgtgttgtggtttaatgagtgacaaaa 1004472  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 2122767 - 2122795
Alignment:
Q  231 tgagacaaaaagttgtgttgtggtttagt 259  Q
    |||||||||||||||||||||||||||||    
T  2122767 tgagacaaaaagttgtgttgtggtttagt 2122795  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 3932889 - 3932853
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||| |||||||| |||||||||||||    
T  3932889 gacaaaaagttgtgatgtggtttggtgagagacaaaa 3932853  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 14808083 - 14808047
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  14808083 gacaaaaagttgtgttgtggtttggtgagggacaaaa 14808047  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 31870182 - 31870146
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  31870182 gacaaaaagttgtgttgtggtttggtgagggacaaaa 31870146  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 553444 - 553480
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| |||||||||||||    
T  553444 gacaaaaagttgtgttgtggtttggtgagagacaaaa 553480  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41790515 - 41790475
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  41790515 gtgagacaaaaagttgtgttgtggtttggtgagggacaaaa 41790475  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 700654 - 700622
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgag 262  Q
    ||||||||||||||||||||||||||| |||||    
T  700654 gtgagacaaaaagttgtgttgtggtttggtgag 700622  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4689747 - 4689711
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  4689747 gacaaaaagttgtgttgtggtttggtgagggacaaaa 4689711  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 5571693 - 5571657
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  5571693 gacaaaaagttgtgttgtggtttggtgagggacaaaa 5571657  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 5673186 - 5673222
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  5673186 gacaaaaagttgtgttgtggtttggtgagggacaaaa 5673222  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 6284347 - 6284311
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  6284347 gacaaaaagttgtgttgtggtttggtgagggacaaaa 6284311  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 7208283 - 7208243
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  7208283 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 7208243  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 8136884 - 8136920
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  8136884 gacaaaaagttgtgttgtggtttggtgagggacaaaa 8136920  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 32528762 - 32528798
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  32528762 gacaaaaagttgtgttgtggtttggtgagggacaaaa 32528798  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 39918550 - 39918590
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  39918550 gtgagacaaaaagttgtgctgtggtttggtgagggacaaaa 39918590  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 1692 - 1633
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagac-aaaattttagtttgtgtcatgtccct 292  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||| |||||||    
T  1692 gacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtccct 1633  T

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Target: scaffold0595 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 6967 - 6928
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaattt 273  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  6967 gacaaaaagttgtgttgtggtttattgagtgacaaaattt 6928  T

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Target: scaffold0729 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4628 - 4592
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  4628 gacaaaaagttgtgttgtggtttggtgagggacaaaa 4592  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 15430 - 15394
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  15430 gacaaaaagttgtgttgtggtttggtgagggacaaaa 15394  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 12585 - 12549
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  12585 gacaaaaagttgtgttgtggtttggtgagggacaaaa 12549  T

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Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 18103 - 18067
Alignment:
Q  234 gacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  18103 gacaaaaagttgtgttgtggtttggtgagggacaaaa 18067  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 15215 - 15255
Alignment:
Q  230 gtgagacaaaaagttgtgttgtggtttagtgagagacaaaa 270  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  15215 gtgagacaaaaagttgtgttgtggtttggtgggggacaaaa 15255  T

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