View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_29 (Length: 342)
Name: NF5076_low_29
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 3632594 - 3632272
Alignment:
| Q |
1 |
actatcgcttccagataagaataaatggcaactcctgtatccaccttcttcccttgataatacatcgacgtctttgacatcaataccatatttgggagaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3632594 |
actatcacttccagataagaataaatggcaactcctgtatccaccttcttcccttgataatacatcgacgtctttgacatcaataccatattttggagaa |
3632495 |
T |
|
| Q |
101 |
ggtgccaaatccttgttcgtttcaaagaagagaaggtttcagcaaaaaatgtaactaatataacaatcacaagggactatcagaattgaatgataaacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632494 |
ggtgccaaatccttgttcgtttcaaagaagagaaggtgtcagcaaaaaatgtaactaatataacaatcacaagggactatcagaattgaatgataaacta |
3632395 |
T |
|
| Q |
201 |
aaatgtaacgggtgaaaatcaaattgaattaaatacaaacagagaatgattttcaatatgaagcaaaaataagtagtactgtaccatttgcaaaccatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632394 |
aaatgtaacgggtgaaaatcaaattgaattaaatacaaacagagaatgattttcaatatgaagcaaaaataagtagtactgtaccatttgcaaaccatta |
3632295 |
T |
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| Q |
301 |
gcattactgtactatatccatgt |
323 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
3632294 |
gcattattgtactatatccatgt |
3632272 |
T |
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