View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_31 (Length: 326)

Name: NF5076_low_31
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_31
NF5076_low_31
[»] chr8 (1 HSPs)
chr8 (18-313)||(38947586-38947881)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 38947586 - 38947881
Alignment:
Q  18 catattgttaaggttttcaaattattagacgtatgaatatgattgaacgctctcatcccttcaactaatttctgatatgaaattcaaaatcattttaaca 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38947586 catattgttaaggttttcaatttattagacgtatgaatatgattgaacgctctcatcccttcagctaatttctgatatgaaattcaaaatcattttaaca 38947685  T
Q  118 agataaaaaacattgcttggagcatgggatcccagaatatatcaacttttttctttctattgttgcttgctcctagagaagtgaacaaagtagcaaaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38947686 agataaaaaacattgcttggagcatgggatcccagaatatatcaacttttttctttctattgttgcttgctcctagagaagtgaacaaagtagcaaaagc 38947785  T
Q  218 ccattcaaatggtgttggtagttgtcatatcgggtttttagttattttccccttttattcaacataaaatatttaaaagtgcttttatagttagta 313  Q
     |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38947786 tcattcaaatggtgttggtagctgtcatatggggtttttagttattttccccttttattcaacataaaatatttaaaagtgcttttatagttagta 38947881  T

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