View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_34 (Length: 309)
Name: NF5076_low_34
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_34 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 44442452 - 44442732
Alignment:
| Q |
18 |
cttatattgtaagatagccttcaaagagaggttattaattacattcatacataactaattaacaaccatgactactagatccttcacggtaatcattctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44442452 |
cttatattgtaagatagccttcaaagagaggttattaattacattcatacataactaattaacaaccatgactactagatccttcacggtaatcattgtt |
44442551 |
T |
|
| Q |
118 |
gctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaatggcgaaccagttgaggctggtgacgaatacttcatcaggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
44442552 |
gctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaatggtgaaccagttgaggccggtgacgaatacttcatcaggc |
44442651 |
T |
|
| Q |
218 |
ctataatcacaggcaacggaggaactacattggtcaccagaaatggatcatgtcctttggatgtcggtcttgaacagaatt |
298 |
Q |
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| T |
44442652 |
ctataatcacaggcaacggaggaactacattagtcaccagaaatggatcatgtcctttggatgtcggtcttgaacagaatt |
44442732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 4294914 - 4295064
Alignment:
| Q |
68 |
ataactaattaacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcat |
167 |
Q |
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| T |
4294914 |
ataattaattaacaaccatgtcaactagatccctcactatattcatcattgctcatgtgttgctctttatgatcacaacatcagtagcacaaattgtcat |
4295013 |
T |
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| Q |
168 |
agacacgaatggcgaaccagttgaggctggtgacgaatacttcatcaggcc |
218 |
Q |
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|||||| | ||||||||| ||||||| | ||| ||||||||||||||||| |
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| T |
4295014 |
agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcc |
4295064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 4286491 - 4286615
Alignment:
| Q |
116 |
ttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaatggcgaaccagttgaggctggtgacgaatacttcatcag |
215 |
Q |
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||||||||||||| |||| ||||||||||||||| |||| || | ||||||||||| | ||||||||| ||||||| | ||| |||||||||||||| |
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| T |
4286491 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
4286590 |
T |
|
| Q |
216 |
gcctataatcacaggcaacggagga |
240 |
Q |
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|||| ||||||||||| |||||| |
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| T |
4286591 |
gcctgctatcacaggcaatggagga |
4286615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 21371045 - 21370872
Alignment:
| Q |
67 |
cataactaattaacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtca |
166 |
Q |
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||||| ||| ||||||||||| | |||| |||| |||| || |||| |||||| |||||||| | || |||| || ||||||||||||||||| |||| |
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| T |
21371045 |
cataattaaataacaaccatgtcaactaaatccctcaccatattcatccttgctaatgtgtgtcttttgatgacaacgacatcaatagctcagtttgtca |
21370946 |
T |
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| Q |
167 |
tagacacgaatggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggagga |
240 |
Q |
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| ||||| | ||||||||||||||||| | || |||||||||||||||||| ||||| ||||| |||||| |
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| T |
21370945 |
tcgacacaagtggcgaaccagttgaggacgacgaggaatacttcatcaggcctgctatcactggcaatggagga |
21370872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 21404268 - 21404105
Alignment:
| Q |
78 |
aacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaat |
177 |
Q |
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|||||||||| | |||| ||||||||| || |||| |||||| ||||||| | || || | |||||||||||||||||||| ||||| ||||| | |
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| T |
21404268 |
aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc |
21404169 |
T |
|
| Q |
178 |
ggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggaggaa |
241 |
Q |
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|| ||||| |||||| || ||| || ||||||||||| ||| ||||| ||||||||||||| |
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| T |
21404168 |
ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaa |
21404105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 21798760 - 21798597
Alignment:
| Q |
78 |
aacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaat |
177 |
Q |
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|||||||||| | |||| ||||||||| || |||| |||||| ||||||| | || || | |||||||||||||||||||| ||||| ||||| | |
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| T |
21798760 |
aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc |
21798661 |
T |
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| Q |
178 |
ggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggaggaa |
241 |
Q |
| |
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|| ||||| |||||| || ||| || ||||||||||| ||| ||||| ||||||||||||| |
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| T |
21798660 |
ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaa |
21798597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 33774 - 33925
Alignment:
| Q |
142 |
acaacatcaatagctcagttggtcatagacacgaatggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggagga- |
240 |
Q |
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|||||||||||||||||||| ||||| ||||| | ||||||||| ||||||| | ||| ||||||||||| || ||| |||||||||||||||||| |
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| T |
33774 |
acaacatcaatagctcagtttgtcatcgacacaagtggcgaacctgttgaggacgatgaggaatacttcattagacctgctatcacaggcaacggaggag |
33873 |
T |
|
| Q |
241 |
--actacattggtcaccagaaatggatcatgtcctttggatgtcggtcttga |
290 |
Q |
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| || |||||||| |||||||| |||| |||||| |||| |||||||| |
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| T |
33874 |
gttccactttggtcacaggaaatggaccatgccctttgcatgttggtcttga |
33925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 26397 - 26235
Alignment:
| Q |
78 |
aacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaat |
177 |
Q |
| |
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|||||||||| | ||||||||| |||| || ||||||| ||||||||||| | || ||| |||| ||||||||| ||||| ||||| ||||| | | |
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| T |
26397 |
aacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcaatagcccagtttgtcatcgacacaagt |
26298 |
T |
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| Q |
178 |
ggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggagga |
240 |
Q |
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|||||||| ||||||| | || |||||||||||||||||| ||||||||||| |||||| |
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|
| T |
26297 |
ggcgaacccgttgaggacgacgaggaatacttcatcaggcctgctatcacaggcaatggagga |
26235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 16916 - 17082
Alignment:
| Q |
74 |
aattaacaaccatgactactagatccttcacggtaatcattcttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacac |
173 |
Q |
| |
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|||||||||||||| | ||||||||| |||| || ||||||| ||||||||||| | || ||| |||| |||| |||| ||||| ||||| ||||| |
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| T |
16916 |
aattaacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcattagcccagtttgtcatcgacac |
17015 |
T |
|
| Q |
174 |
gaatggcgaaccagttgaggctggtgacgaatacttcatcaggcctataatcacaggcaacggagga |
240 |
Q |
| |
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| ||||||||| ||||||| | || ||||||||||| |||||| ||||||||||| |||||| |
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|
| T |
17016 |
aagtggcgaacccgttgaggacgacgaggaatacttcattaggcctgctatcacaggcaatggagga |
17082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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