View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_low_44 (Length: 256)
Name: NF5076_low_44
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 42036325 - 42036552
Alignment:
| Q |
17 |
caatgttctccttcctaacaggatcattcaaataacttacaagcttacgctccttcacaacttcgccaaacaactccattgccttcttaaatcccatctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42036325 |
caatgttctccttcctaacaggatcattcaagtaacttacaagcttacgctccttcacaacttcgccaaacaactccattgccttcttaaatcccatctc |
42036424 |
T |
|
| Q |
117 |
gtcatgcttaggaatgggaagtatcctcttcaacgtacaatcctcctcataaagcttataagcctcaatcctcaactcatttattgaaggctctttgtat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42036425 |
gtcatgcttaggaatgggaagtatcctcttcaacgtacaatcctcctcataaagcttataagcctcaatcctcaactcatttattgaaggctctttgtat |
42036524 |
T |
|
| Q |
217 |
ccataaaaagggcctaattttgtcttca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42036525 |
ccataaaaagggcctaattttgtcttca |
42036552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 35886531 - 35886386
Alignment:
| Q |
90 |
ctccattgccttcttaaatcccatctcgtcatgcttaggaatgggaagtatcctcttcaacgtacaatcctcctcataaagcttataagcctcaatcctc |
189 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||| |||| || ||| | ||| || ||||||||||||| ||||| ||||||||||||||| || |
|
|
| T |
35886531 |
ctccattgctttcttaaatcccatctcatgatgcttagagatggcaactattcccttagacttacaatcctcctcgtaaagtttataagcctcaatcttc |
35886432 |
T |
|
| Q |
190 |
aactcatttattgaaggctctttgtatccataaaaagggcctaattttg |
238 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| ||| ||||| |||| |
|
|
| T |
35886431 |
aactcattttt---aggcttttggtatccataaagaggacctaactttg |
35886386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 35902605 - 35902465
Alignment:
| Q |
90 |
ctccattgccttcttaaatcccatctcgtcatgcttaggaatgggaagtatcctcttcaacgtacaatcctcctcataaagcttataagcctcaatcctc |
189 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||| |||| | ||| | ||| || ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
35902605 |
ctccattgctttcttaaatcccatctcatgatgcttagagatggcagctattcccttagacttacaatcctcctcataaagcttatacgcctcaatcttc |
35902506 |
T |
|
| Q |
190 |
aactcatttattgaaggctctttgtatccataaaaagggcctaa |
233 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| ||| ||||| |
|
|
| T |
35902505 |
aactcattttt---aggcttttggtatccataaagaggacctaa |
35902465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University