View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_55 (Length: 243)

Name: NF5076_low_55
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_55
NF5076_low_55
[»] chr1 (3 HSPs)
chr1 (1-240)||(40986363-40986602)
chr1 (82-240)||(40994128-40994285)
chr1 (179-226)||(40989752-40989799)
[»] chr2 (1 HSPs)
chr2 (82-227)||(21180654-21180799)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40986602 - 40986363
Alignment:
Q  1 tctaaacattttgtcctttgttatacacaaaaaggttgctccatccgcacgtgacctagtaacagtgagtacaaaaacttatttgaatgtaagacatttg 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40986602 tctaaacattttgtcttttgttatgcacaaaaaggttgctccatccgcaggtgacctagtaacagtgagtgcaaaaacttatttgaatgtaagacatttg 40986503  T
Q  101 attctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactcacattggacataagtcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40986502 attctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactcacattggacataagtcaac 40986403  T
Q  201 aagttatatttaaggtgagtcaaataccgttacatttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40986402 aagttatatttaaggtgagtcaaataccgttacatttcat 40986363  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 40994285 - 40994128
Alignment:
Q  82 tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc 181  Q
    ||||||||||| ||||||||||||||| || |||||||||  |||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||     
T  40994285 tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttgaaaaactt 40994186  T
Q  182 acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat 240  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||| | |||||||||||    
T  40994185 acattggacataagtccacaagttatatttgaggtgagtaaaata-ctttacatttcat 40994128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 40989799 - 40989752
Alignment:
Q  179 ctcacattggacataagtcaacaagttatatttaaggtgagtcaaata 226  Q
    ||||||||  ||||||||| ||||||||||||| ||||||||||||||    
T  40989799 ctcacatttcacataagtccacaagttatatttgaggtgagtcaaata 40989752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 21180654 - 21180799
Alignment:
Q  82 tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc 181  Q
    ||||||||||| |||||||| |||||| ||  ||||||||  ||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  21180654 tttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgcttgaaaaactc 21180753  T
Q  182 acattggacataagtcaacaagttatatttaaggtgagtcaaatac 227  Q
    | |||||||||||||| |||| |||||||| |||| ||||||||||    
T  21180754 atattggacataagtccacaacttatatttgaggtcagtcaaatac 21180799  T

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