View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_56 (Length: 241)
Name: NF5076_low_56
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_56 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 33207016 - 33206788
Alignment:
| Q |
16 |
ctttacacatacaaaccaccatatagtataataaacgataaagtttatttaaaaagttaaacaataagactacattggtccatctgtatacatgaataat |
115 |
Q |
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| T |
33207016 |
ctttatacgtacaaaccaccatataatataataaacgataaagtttatttaaaaagttaaacaataagactacattggtccatctgtatacatgaataat |
33206917 |
T |
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| Q |
116 |
atgaattcca--atttannnnnnncaaaagtaaaaagggtaatttatatacttaatactcactaagggcatgccaagtgatgaaagtttgcat-aaaaaa |
212 |
Q |
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| T |
33206916 |
atgaatgctattttttttttttttcaaaagtaaaaagggtaatttatatacttaatactcactaagggcatgccaagtgatgaaagtttgcataaaaaaa |
33206817 |
T |
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| Q |
213 |
gctagaagacactttacaagtctataaac |
241 |
Q |
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| T |
33206816 |
gctagaagacactttacaagtctacaaac |
33206788 |
T |
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