View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_low_58 (Length: 238)
Name: NF5076_low_58
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34130834 - 34130605
Alignment:
| Q |
1 |
cacagagtgatggttaactctgagaaagaaaggttttcaattcccttctttttcttccctgcacacgacactgtagtcaaacctctggaggagctgacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34130834 |
cacagagtgatggttaactctgagaaagaaaggttttcaatccccttctttttcttccctgcacacgacactgtagtcaaacctctcgaggagctgacaa |
34130735 |
T |
|
| Q |
101 |
atgaggaaaaccctccaaaatacagaccatacaattggggaaagtttcttgtcaacagaaagagtagcaatttcgagaagaaaaaggcggagaacattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34130734 |
atgaggaaaaccctccaaaatacagaccatacaattggggaaagtttcttgtcaacagaaagagtagcaatttcgagaagaaaaaggtggagaacattca |
34130635 |
T |
|
| Q |
201 |
aatttatcattataagatagcttaaataaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34130634 |
aatttatcattataagatagcttaaataaa |
34130605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 34125691 - 34125481
Alignment:
| Q |
16 |
aactctgagaaagaaaggttttcaattcccttctttttcttccctgcacacgacactgtagtcaaacctctggaggagctgacaaatgaggaaaaccctc |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | | ||||| |||||| ||| || |||||| ||| |||| || || | |||||| |||||||||| |
|
|
| T |
34125691 |
aactttgagaaagaaaggttttcaattgccttcggtgttttcccagcacactacattgaagtcaagcctttggatgaactcataaatgacgaaaaccctc |
34125592 |
T |
|
| Q |
116 |
caaaatacagaccatacaattggggaaagtttcttgtcaacagaaagagtagcaatttcgagaagaaaaaggcggagaacattcaaatttatcattataa |
215 |
Q |
| |
|
||||||| | ||| | ||||||||| ||||||||| |||| | |||||| || ||| | |||||||| | |||||| || |||||| |||| | ||| |
|
|
| T |
34125591 |
caaaatataaacctttcaattggggcaagtttcttatcaataaaaagagcgacactttaaaaaagaaaaatgtggagaatatccaaattcatcactttaa |
34125492 |
T |
|
| Q |
216 |
gatagcttaaa |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
34125491 |
gatagcttaaa |
34125481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 34142131 - 34141937
Alignment:
| Q |
22 |
gagaaagaaaggttttcaattcccttctttttcttccctgcacacgacactgtagtcaaacctctggaggagctgacaaatgaggaaaaccctccaaaat |
121 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| | | | ||| ||| |||||||||| | || ||||| | ||||||| |||||||| |||||| |
|
|
| T |
34142131 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaacccttcaaaat |
34142032 |
T |
|
| Q |
122 |
acagaccatacaattggggaaagtttcttgtcaacagaaagagtagcaatttcgagaagaaaaaggcggagaacattcaaatttatcattataag |
216 |
Q |
| |
|
| || ||||| || ||||||||||||||||| ||||||| |||||| || |||| || | | |||||| |||||||||||||||||||| |
|
|
| T |
34142031 |
ataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataag |
34141937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 12321281 - 12321225
Alignment:
| Q |
91 |
gagctgacaaatgaggaaaaccctccaaaatacagaccatacaattggggaaagttt |
147 |
Q |
| |
|
||||| |||||||| |||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
12321281 |
gagctcacaaatgatcaaaaccctcccaagtatagaccttacaattggggaaagttt |
12321225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 12373241 - 12373185
Alignment:
| Q |
91 |
gagctgacaaatgaggaaaaccctccaaaatacagaccatacaattggggaaagttt |
147 |
Q |
| |
|
||||| |||||||| |||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
12373241 |
gagctcacaaatgatcaaaaccctcccaagtatagaccttacaattggggaaagttt |
12373185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University