View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_low_6 (Length: 498)

Name: NF5076_low_6
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_low_6
NF5076_low_6
[»] chr2 (1 HSPs)
chr2 (21-495)||(10297690-10298167)
[»] chr7 (6 HSPs)
chr7 (204-325)||(48663032-48663152)
chr7 (427-495)||(43789968-43790036)
chr7 (201-325)||(29814348-29814470)
chr7 (201-321)||(21058933-21059053)
chr7 (201-302)||(21044906-21045006)
chr7 (207-239)||(41100406-41100438)
[»] chr3 (5 HSPs)
chr3 (208-264)||(51504534-51504591)
chr3 (201-239)||(38272686-38272724)
chr3 (203-240)||(37795534-37795571)
chr3 (202-249)||(245660-245707)
chr3 (204-250)||(8559651-8559697)
[»] chr8 (2 HSPs)
chr8 (201-239)||(5363584-5363622)
chr8 (203-244)||(18585608-18585649)
[»] chr5 (2 HSPs)
chr5 (203-239)||(14874085-14874121)
chr5 (202-250)||(28975228-28975276)
[»] chr4 (4 HSPs)
chr4 (208-239)||(17879205-17879236)
chr4 (201-240)||(49370213-49370252)
chr4 (203-236)||(22523001-22523034)
chr4 (201-272)||(38702670-38702741)
[»] chr1 (3 HSPs)
chr1 (201-240)||(36282282-36282321)
chr1 (203-240)||(46483753-46483790)
chr1 (206-257)||(5790894-5790946)
[»] chr6 (1 HSPs)
chr6 (203-235)||(7782645-7782677)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 21 - 495
Target Start/End: Original strand, 10297690 - 10298167
Alignment:
Q  21 ttttcttgggttggctgagaaaagtcaaattgtaacttcttatgttaaaagtgttatcttgaaatatttagactgtaccaaagtacacaatcttcagttg 120  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10297690 ttttcttgggttggctaacaaaagtcaaattgtaacttcttatgttaaaagtgttatcttgaaatatttagactgtaccaaagtacacaatcttcagttg 10297789  T
Q  121 tcaatgaattgatgataactaggttaggctgatgccccggttctttatggtattctttggcgaagaattttggaaagaccgacttatttttcttttctaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10297790 tcaatgaattgatgataactaggttaggctgatgccccggttctttatggtattctttggcgaagaattttggaaagactgacttatttttcttttctaa 10297889  T
Q  221 attaaggaagctataaaatactttaaaaataaattaaagtgtgagtgaaatgtgttatatgatcat-tatcatgttattcttttaatttattttaaatct 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  10297890 attaaggaagctataaaatactttaaaaataaattaaagtgtgagtgaaatgtgttatatgatcatctatcatgttattcttttaatcttttttaaatct 10297989  T
Q  320 caaataccaaaatagagt--tagctatccaaaatcctcagacacatccttaattcttcttgtttttgttggggcttcgaatctttacatgtttgattgta 417  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10297990 caaataccaaaatagagttatagctatccaaaatcctcagacacatccttaattctttttgtttttgttggggcttcgaatctttacatgtttgattgta 10298089  T
Q  418 tgaagggaagaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttaactgcacatattcttgga 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  10298090 tgaagggaagaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttgactgcacctattcttgga 10298167  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 48663032 - 48663152
Alignment:
Q  204 ttatttttcttttctaaattaaggaagctataaaatactt-taaaaataaattaaagtgtgagtgaaatgtgttatatgatcat-tatcatgttattctt 301  Q
    ||||||||||||||||||||||||||||||||||||  || | |||||||||| |||| | | |||||  |||||| | ||||| |||||||||||||||    
T  48663032 ttatttttcttttctaaattaaggaagctataaaatgtttctcaaaataaatt-aagtataattgaaa--tgttatttaatcatctatcatgttattctt 48663128  T
Q  302 ttaatttattttaaatctcaaata 325  Q
    | ||||| ||| ||| ||||||||    
T  48663129 tcaatttctttaaaacctcaaata 48663152  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 43790036 - 43789968
Alignment:
Q  427 gaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttaactgcacatattcttgga 495  Q
    |||||| ||||||||||||||| |||||||| ||||| ||||||| |||| ||||||| | ||||||||    
T  43790036 gaatatgagctcttagaagctgtgcaagcaagacttgctgtccatcatttgactgcacctgttcttgga 43789968  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 29814470 - 29814348
Alignment:
Q  201 gacttatttttctttt-ctaaattaaggaagctataaaatactttaaaaataaattaaagtgtgagtgaaatgtgttatatgatcat-tatcatgttatt 298  Q
    |||| ||||||||||| ||||||||||||| ||| |||||| | | |||||||| | |||||||  |||||  |||||||||||||| ||||||||||||    
T  29814470 gactcatttttctttttctaaattaaggaaactaaaaaatattctgaaaataaact-aagtgtggttgaaa--tgttatatgatcatctatcatgttatt 29814374  T
Q  299 cttttaatttattttaaatctcaaata 325  Q
    | || ||||| ||| ||||||||||||    
T  29814373 cgttcaattt-tttaaaatctcaaata 29814348  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 21059053 - 21058933
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaatac--tttaaaaataaattaaagtgtgagtgaaatgtgttatatgatcat-tatcatgttat 297  Q
    ||||| |||||||||||||  ||||||||||||||||   |  |||||||||||||| |||||||| |||||  ||||| |||||||| |||||| ||||    
T  21059053 gacttgtttttcttttctagcttaaggaagctataaatatctttttaaaaataaatt-aagtgtgattgaaa--tgttaaatgatcatgtatcatattat 21058957  T
Q  298 tcttttaatttattttaaatctca 321  Q
    ||| | ||||| ||  ||||||||    
T  21058956 tctgtaaattttttcaaaatctca 21058933  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 21045006 - 21044906
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaat-actttaaaaataaattaaagtgtgagtgaaatgtgttatatgatcat-tatcatgttatt 298  Q
    |||||||| ||||||||||  |||||||||||||||| |   |||||||||||||| |||||||| | |||  |||||||||||||| ||| || |||||    
T  21045006 gacttattattcttttctagcttaaggaagctataaattgtttttaaaaataaatt-aagtgtgattaaaa--tgttatatgatcatctatgatattatt 21044910  T
Q  299 cttt 302  Q
    ||||    
T  21044909 cttt 21044906  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 41100438 - 41100406
Alignment:
Q  207 tttttcttttctaaattaaggaagctataaaat 239  Q
    |||||||||||||||||||| ||||||||||||    
T  41100438 tttttcttttctaaattaagcaagctataaaat 41100406  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 51504534 - 51504591
Alignment:
Q  208 ttttcttttctaaattaaggaagctataaaatactt-taaaaataaattaaagtgtga 264  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||| ||||||||    
T  51504534 ttttcttttctaaattaaggaagctataaaatgtttctaaaaataaatttaagtgtga 51504591  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 38272686 - 38272724
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaat 239  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  38272686 gacttatttttcttttttaaattaaggaagctataaaat 38272724  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 37795534 - 37795571
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctataaaata 240  Q
    |||||||||||||||||||||||| |||||||||||||    
T  37795534 cttatttttcttttctaaattaagtaagctataaaata 37795571  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 245660 - 245707
Alignment:
Q  202 acttatttttcttttctaaattaaggaagctataaaatactttaaaaa 249  Q
    |||||||||||||| |||||||||| ||||||||||||| ||| ||||    
T  245660 acttatttttctttactaaattaagcaagctataaaatatttttaaaa 245707  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 8559697 - 8559651
Alignment:
Q  204 ttatttttcttttctaaattaaggaagctataaaatactttaaaaat 250  Q
    |||||||||||||| |||||||| ||||||||||||  |||||||||    
T  8559697 ttatttttcttttccaaattaagcaagctataaaatgttttaaaaat 8559651  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 5363584 - 5363622
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaat 239  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5363584 gacttatttttcttttctaaattaaggaaactataaaat 5363622  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 18585649 - 18585608
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctataaaatacttt 244  Q
    ||||||||||||||||||||||| |||| |||||||| ||||    
T  18585649 cttatttttcttttctaaattaaagaagttataaaatgcttt 18585608  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 14874085 - 14874121
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctataaaat 239  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14874085 cttacttttcttttctaaattaaggaagctataaaat 14874121  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 28975228 - 28975276
Alignment:
Q  202 acttatttttcttttctaaattaaggaagctataaaatactttaaaaat 250  Q
    ||||||||||||||||||||||||  | ||||||||||| ||| |||||    
T  28975228 acttatttttcttttctaaattaattacgctataaaataattttaaaat 28975276  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 239
Target Start/End: Original strand, 17879205 - 17879236
Alignment:
Q  208 ttttcttttctaaattaaggaagctataaaat 239  Q
    ||||||||||||||||||||||||||||||||    
T  17879205 ttttcttttctaaattaaggaagctataaaat 17879236  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 49370213 - 49370252
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaata 240  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  49370213 gacttgtttttcttttctaaattaagcaagctataaaata 49370252  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 22523001 - 22523034
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctataa 236  Q
    |||||||||||||||||||||||| |||||||||    
T  22523001 cttatttttcttttctaaattaagaaagctataa 22523034  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 38702670 - 38702741
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaatac-tttaaaaataaattaaagtgtgagtgaaatg 272  Q
    |||||||||||||| |||| | |||| |||||||||||| | ||| |||||||||| |||||||| |||||||    
T  38702670 gacttatttttcttatctacactaagaaagctataaaatgcttttgaaaataaatt-aagtgtgattgaaatg 38702741  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 36282282 - 36282321
Alignment:
Q  201 gacttatttttcttttctaaattaaggaagctataaaata 240  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  36282282 gacttatttttcttttcgaaattaagaaagctataaaata 36282321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 46483753 - 46483790
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctataaaata 240  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  46483753 cttatttttcttttttaaattaaggaaactataaaata 46483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 5790946 - 5790894
Alignment:
Q  206 atttttcttttctaaattaaggaagctataaaa-tactttaaaaataaattaa 257  Q
    |||||| |||| ||||||||||||||||||||| | |||||||| ||||||||    
T  5790946 atttttattttgtaaattaaggaagctataaaatttctttaaaagtaaattaa 5790894  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 7782645 - 7782677
Alignment:
Q  203 cttatttttcttttctaaattaaggaagctata 235  Q
    ||||||||||||||||| |||||||||||||||    
T  7782645 cttatttttcttttctatattaaggaagctata 7782677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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