View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_62 (Length: 235)
Name: NF5076_low_62
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42637748 - 42637529
Alignment:
| Q |
1 |
gctgttaaaaaacatgagactattaagtgatcattaagttattactgcaagataaaagttaaagaattatannnnnnncttagtattttatcatgtactc |
100 |
Q |
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| T |
42637748 |
gctgttaaaaaaaatgagactattaagtgatcattaagttattactgcaagataaaagttaaagaatgatatttttt-cttagtattttatcaagtactc |
42637650 |
T |
|
| Q |
101 |
acactcagaacatgattttttcgataataatttactacaatgctacttaaactaacagtttcttaaataacaatgatctccgacaacggcgccaacatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42637649 |
acactcagaacatgattttttcgataataatttactacaatactacttaaactaacagtttcttaaatatcaatgatctccgacaacggcgccaacatgt |
42637550 |
T |
|
| Q |
201 |
gtttagaaagggcaactgttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42637549 |
gtttagaaagggcaactgttg |
42637529 |
T |
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