View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_64 (Length: 227)
Name: NF5076_low_64
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_64 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 45269788 - 45269567
Alignment:
| Q |
6 |
aaaagggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45269788 |
aaaagggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatactctgcaaattctttccatcccttttgaaaccatattttgc |
45269689 |
T |
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| Q |
106 |
catcactttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45269688 |
catcactttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttct |
45269589 |
T |
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| Q |
206 |
tggcatcatctgctaatcaatt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
45269588 |
tggcatcatctgctaatcaatt |
45269567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 16863247 - 16863054
Alignment:
| Q |
23 |
atatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatcactttttaccaaa |
122 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||| | |||||| |||| |
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| T |
16863247 |
atatttgaaaagcagaagatggccatgagctagagaatgatgctctgcaaattctttccaacccttttcaaaccatatcttgccattaatttttagcaaa |
16863148 |
T |
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| Q |
123 |
tttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatct |
216 |
Q |
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| T |
16863147 |
tttaatttccactttgcaccatttggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttcttggcatcatct |
16863054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 16868131 - 16867925
Alignment:
| Q |
11 |
ggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatca |
110 |
Q |
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||||||| |||||||| | ||||| || |||||||||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||||| ||||||||| |
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| T |
16868131 |
ggaagttttttcatatctgaaaagaagaagatggccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaccatatcttgccatca |
16868032 |
T |
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| Q |
111 |
ctttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggca |
210 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| |||| | ||| |||| | || |||||||||||||||||| |||||||||| |
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| T |
16868031 |
ctttttaccaaatttaatttccattttccaccatttggagtctttagacatgtttcttttggtagactttttccatatttctccacaaattttcttggca |
16867932 |
T |
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| Q |
211 |
tcatctg |
217 |
Q |
| |
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||||||| |
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| T |
16867931 |
tcatctg |
16867925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 17612685 - 17612478
Alignment:
| Q |
10 |
gggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatc |
109 |
Q |
| |
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||||||||||| ||||||| |||||||| |||||||| |||| || |||||||| || ||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
17612685 |
gggaagttcttccatatttgaaaagcagaagatggccttgagataaagaatgatacttcacaaattctttccaacccttttcaaaccatattttaccatc |
17612586 |
T |
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| Q |
110 |
actttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggc |
209 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| || | ||| | |||||||||||||||||||||||||||||| |
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| T |
17612585 |
actttttaccaaatttaatttccactttgcaccatttggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttcttggg |
17612486 |
T |
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| Q |
210 |
atcatctg |
217 |
Q |
| |
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|| ||||| |
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| T |
17612485 |
attatctg |
17612478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 16873235 - 16873034
Alignment:
| Q |
16 |
ttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatcactttt |
115 |
Q |
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|||||| |||||| |||||||| ||||||||||| |||||||| ||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
16873235 |
ttcttttatatttgaaaagcagaagatggccatgtgctagagagtgatgctttgcaaattctttccaacccttttcaaaccatatttttccatcactttt |
16873136 |
T |
|
| Q |
116 |
taccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatc |
215 |
Q |
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|||||||||||||||||| || | || ||||||||||||| | |||||| ||| | ||| | ||||||||||||||| ||||||||||| ||||||||| |
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| T |
16873135 |
taccaaatttaatttccacttcgccccgtttggagtctttagatatatagcttttgataaaccttctccatatttctctacaaactttctcggcatcatc |
16873036 |
T |
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| Q |
216 |
tg |
217 |
Q |
| |
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|| |
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| T |
16873035 |
tg |
16873034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 17605683 - 17605467
Alignment:
| Q |
11 |
ggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatca |
110 |
Q |
| |
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||||||| |||||||| | |||||||| |||||||||||| ||| ||| |||||||| ||||||| |||||| ||||| | ||||||||| ||||||||| |
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| T |
17605683 |
ggaagttttttcatatctgaaaagcagaagatggccatgacctatagagtgatgctctgcaaattgtttccaacccttctcaaaccatatcttgccatca |
17605584 |
T |
|
| Q |
111 |
ctttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggca |
210 |
Q |
| |
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|| || |||||||||||| |||| ||| |||||||||||||||||| |||||||| ||| |||| | || ||||||||| ||||||||||||||||||| |
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| T |
17605583 |
ctcttaaccaaatttaatctccattttgcaccatttggagtctttagacatatagcttttggtagaccttttccatatttttccacaaactttcttggca |
17605484 |
T |
|
| Q |
211 |
tcatctgctaatcaatt |
227 |
Q |
| |
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|| |||| |||| |||| |
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| T |
17605483 |
tcctctgttaattaatt |
17605467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 16889244 - 16889037
Alignment:
| Q |
10 |
gggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatgctcggcaaattctttccatcccttttgaaaccatattttgccatc |
109 |
Q |
| |
|
||||||||||||||||||| |||| || |||||| || |||||| ||||| || ||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
16889244 |
gggaagttctttcatatttgaaaataagaagatggtattgtgctagattatgatactttgcaaattgcttccaacccttttgaaaccatatcttgccatc |
16889145 |
T |
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| Q |
110 |
actttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggc |
209 |
Q |
| |
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| |||||||||||| ||||||||| ||| ||||| |||||||||||| | |||||| || ||||| || | || ||||||||| |||||||||||||| |
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| T |
16889144 |
aatttttaccaaatctaatttccactttgcaccacttggagtctttagatatatagcatttggtaaacaatttcgatatttctctacaaactttcttgga |
16889045 |
T |
|
| Q |
210 |
atcatctg |
217 |
Q |
| |
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|||||||| |
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|
| T |
16889044 |
atcatctg |
16889037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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