View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_7 (Length: 490)
Name: NF5076_low_7
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 19755413 - 19754963
Alignment:
| Q |
19 |
caattgaccccatctttgaggacaatatgatagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgctttctgaacctcctcaagattt |
118 |
Q |
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| T |
19755413 |
caattaaccccatctttgaggacaatatgataattgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctcaagattt |
19755314 |
T |
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| Q |
119 |
gaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtggg |
218 |
Q |
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| T |
19755313 |
gaatgataaaagtgttgaagatgatcaacaacacattgatgaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtggg |
19755214 |
T |
|
| Q |
219 |
ttgaactctgaagatgatacaaagcacactgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755213 |
ttgaactctgaagatgatacaaagcacactgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaa |
19755114 |
T |
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| Q |
319 |
agacaaaatctcctactccagtgacaaattctaccactgtgactataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttga |
418 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755113 |
agacaaaatctcctactcgagtgacaaattctaccagtgtgacaataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttga |
19755014 |
T |
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| Q |
419 |
tcttatgttggttggtaatatcctcccttcaaatactgacacagagtcttc |
469 |
Q |
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| T |
19755013 |
tcttatgttggttggtaatatcctcccttcaaatactgacacagagtcttc |
19754963 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 8135128 - 8135228
Alignment:
| Q |
96 |
ctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtg |
195 |
Q |
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|||||||| | | ||||||||| ||||| | |||| ||||||||||||| || |||| | |||| ||| | |||||||||||||||| |||||| ||| |
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| T |
8135128 |
ctttctgatcattctcaagattcaaatgccagaagtattgaagatgatcagcatcacactgatgaggaagacgaagggggtccatctctagtcgaaagtg |
8135227 |
T |
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| Q |
196 |
g |
196 |
Q |
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| T |
8135228 |
g |
8135228 |
T |
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