View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_9 (Length: 479)
Name: NF5076_low_9
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 464
Target Start/End: Complemental strand, 45174238 - 45173795
Alignment:
| Q |
21 |
tactgggtcattagagatacaacatctttatctaaagctttaaagcatctaagatacgaannnnnnncgatctatatgctgctcaaccgtcacttttttc |
120 |
Q |
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| T |
45174238 |
tactgggtcatgagagatacaacatctttatctaaagctttaaa-catctaagatacaaatttttttcgatctatatgttgctcaaccgtcacttttttc |
45174140 |
T |
|
| Q |
121 |
aagcaatatgtatgtcggacttacgactcacacttgttagacaatataatgtttggataaaatgtaaatttggtgaaacaccgtacaaaataaggagagt |
220 |
Q |
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|||||| || |||||| |||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||| |
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| T |
45174139 |
aagcaagatatatgtctgacttatgattcacacttgttagacaatataatgtttggataaaatgttagtttggtgaaacactgtacaaaacaaggagagt |
45174040 |
T |
|
| Q |
221 |
tgcggcaattttaggtgccattaaatgccgtggctcaaattgccactattttacgttggttccacttatgtcatggatacaggcactgttagcacctatt |
320 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45174039 |
tgcggcaattttaggtgccataaaatgtcgtggctcaaattgccactattttacgctggttccacttatgtcatggatacaggcactgtcagcacctatt |
45173940 |
T |
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| Q |
321 |
gtggcggtttgaacacctgccgcacaactgttggaaacgacctataacattttatatttgtgtttgtgaccatgtaag-annnnnnngtttaaattaatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
45173939 |
gtggcggtttgaacacctgccgcacaactgttggaaacgacctataacattttatatttgtgtttgtgaccatgtaagcatttttttgtttaaattaatg |
45173840 |
T |
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| Q |
420 |
taacttactaatataactaatctttatacataataccgtaatttt |
464 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
45173839 |
taacatgctaatataactaatctttatacataataccgtaatttt |
45173795 |
T |
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