View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077-Insertion-2 (Length: 686)
Name: NF5077-Insertion-2
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 95 - 686
Target Start/End: Complemental strand, 41966215 - 41965624
Alignment:
| Q |
95 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcatctccactttctccaactcatcatccttcattaccacctca |
194 |
Q |
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| T |
41966215 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcatttccactttctccaactcatcatccttcattaccacctca |
41966116 |
T |
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| Q |
195 |
tcttcaaccaaatcaatctcatcatcacttttctcttggaacattagtcaatgacagcatgttgcaaaaccctttccaaaatcatggtaatttaatcaac |
294 |
Q |
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| T |
41966115 |
tcttcaaccaaatcaatctcatcatcacttttctcttggaacattagtcaatgacaacatgttgcaaaaccctttccaaaatcatggtaatttaatcaac |
41966016 |
T |
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| Q |
295 |
ctcttttatatctgcttcaagctgccacatatataaatataacctatgttttgttgattattttattgatgattaaacagattggaacttgatgaatagt |
394 |
Q |
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| T |
41966015 |
ctcttttatatctgcttcaagctgccacatatataaatataacctatgttttgttgattattttattgatgattaaacagattggaacttgatgaatagt |
41965916 |
T |
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| Q |
395 |
agtcacaactcaaacgaagttcctaaggttgcagattttcttggtgtgggcagcaagagtactgaaaatgagtcagatcttgcagcctataatgaaatga |
494 |
Q |
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| T |
41965915 |
agtcacaactcaaacgaagttccaaaggttgcagattttcttggtgtgagcagcaagagtactgaaaatgagtcagatcttgcagcctataatgaaatga |
41965816 |
T |
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| Q |
495 |
ataactcaaatcatcattctttagatgattacttgttgatgccgccagtacaaaatagctcagcaacttctagcaacaactatgaccaatatgaagaaaa |
594 |
Q |
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| T |
41965815 |
atagctcaaatcatcattctttagataattacttgttcatgccgccagtacaaaatagctcagcaacttctagcaacaactatgaccaatatgaagaaaa |
41965716 |
T |
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| Q |
595 |
ccctaacaataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctg |
686 |
Q |
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| T |
41965715 |
ccctaacaataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctg |
41965624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 41966268 - 41966211
Alignment:
| Q |
7 |
actttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
64 |
Q |
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| T |
41966268 |
actttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
41966211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 24563999 - 24563937
Alignment:
| Q |
215 |
atcatcacttttctcttggaacattagtcaatgacagcatgttgcaaaaccctttccaaaatcatggta |
283 |
Q |
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| T |
24563999 |
atcatcactttcctcttgga---ttagtcaatgacaacatgg---aaaaccctttccaaaatcatggta |
24563937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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