View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077-Insertion-3 (Length: 544)
Name: NF5077-Insertion-3
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 479
Target Start/End: Complemental strand, 34091586 - 34091114
Alignment:
| Q |
7 |
atccatcgatctagggcatttaatcagtgttaaattaagcattgatgtttgctaaataaactcattacacaatggtgtacaaattaccacatttagcttc |
106 |
Q |
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| T |
34091586 |
atccatcgatctagggcatttaatcagtgttaaattaagcattgatgtttgctaaataaacttattacacaatggtgtacaaattaccacatttagcttc |
34091487 |
T |
|
| Q |
107 |
catcgtgcatgtgtcctacttttgcattttctaaaagaaacccacaaaaccagttactcttactctaaatataaatatttatgtagatacatatttttca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
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| T |
34091486 |
catcgtgcatgtgtcctacttttgcattttctaaaagaaacccacaaaaccagttactcttactctaactatatatatttatgcagatacatatttttca |
34091387 |
T |
|
| Q |
207 |
atcacaacaattgtactcgatatggttttggtttttctgtatttgtaagcattggatcctcttccacaaattaatgtattgcatgcctacccagttgggg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
34091386 |
atcacaacaattgtactcgatatggttttggtttttctgtatttgtaagcattggatcctcttccacaaattaatgtattgcatgccaacccaattgggg |
34091287 |
T |
|
| Q |
307 |
ttgatctgatgg-ttgtcatgagatcttgaagtttgttctactt-gggttttaaattcaattttctctctgatataaattttggtggagaaagttcatat |
404 |
Q |
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||| |||||||| |||||||| ||||||| |||||||||||||| | | ||| |||| |||| |||||||||||||||| | |||| ||||| |||| |
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| T |
34091286 |
ttggtctgatggtttgtcatgtgatcttggagtttgttctacttaagatcttatattcgattt--tctctgatataaatttcgatggatgaagtttatat |
34091189 |
T |
|
| Q |
405 |
aaaattatgctctaattttaaatgggcccctgcaagtggacggtgagattggtaccaatgaattagtcggttctt |
479 |
Q |
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| T |
34091188 |
aaaattatgctctgactttaaatggacccctgcaaatggacggtgagattggtagcaatgaattagtcgattctt |
34091114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 486 - 544
Target Start/End: Complemental strand, 34091083 - 34091025
Alignment:
| Q |
486 |
taacgcatgaattaatcactcatttgtccttcattgtaaccatgctctcatattgttga |
544 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
34091083 |
taactcatgaattaatcactcctttgtccttcattataaccatgctctcatattgttga |
34091025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 16899630 - 16899659
Alignment:
| Q |
428 |
gggcccctgcaagtggacggtgagattggt |
457 |
Q |
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| T |
16899630 |
gggcccctgcaagtggacggtgagattggt |
16899659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 1379017 - 1379053
Alignment:
| Q |
421 |
tttaaatgggcccctgcaagtggacggtgagattggt |
457 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |
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| T |
1379017 |
tttaaacgggcccccgcaagtggacggtgagattggt |
1379053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 39145729 - 39145671
Alignment:
| Q |
421 |
tttaaatgggcccctgcaagtggacggtgagattggtaccaatgaattagtcggttctt |
479 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| || |||||||||| ||||| |
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| T |
39145729 |
tttaaacgggcccctgcaagtggacggtgggattggtcccctcgaattagtcgattctt |
39145671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 453
Target Start/End: Complemental strand, 6258584 - 6258552
Alignment:
| Q |
421 |
tttaaatgggcccctgcaagtggacggtgagat |
453 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
6258584 |
tttaaatggtcccctgcaagtggacggtgagat |
6258552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 44610149 - 44610217
Alignment:
| Q |
412 |
tgctctaattttaaatggg-cccctgcaagtggacggtgagattggtaccaatgaattagtcggttctt |
479 |
Q |
| |
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||||||| |||||||||| ||||||||||||| ||||| ||||||| ||| | |||||||||||||| |
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| T |
44610149 |
tgctctagctttaaatggggcccctgcaagtgggcggtgggattggtcccatcggattagtcggttctt |
44610217 |
T |
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