View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5077-Insertion-4 (Length: 338)

Name: NF5077-Insertion-4
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5077-Insertion-4
NF5077-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-338)||(43761693-43762013)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 43762013 - 43761693
Alignment:
Q  8 ctctctacccccaataacgtcttgatttgaatattgaccacaaataacttaatcaaacaataaaaccatcttaacaaccccaatatcttgagtatacttg 107  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  43762013 ctctctacccccaataacgtcttaatttgaatattgaccataaataacttaatcaaacaataaaaccatcttaa----------atcttgagtatacttg 43761924  T
Q  108 ccatgccatgattaaaaatgcaaaagtcaaatacaataagtagagcgaaagtgtacataattcagtgagaaaggtnnnnnnntgatccagacatatataa 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||    
T  43761923 ccatgccatgattaaaaatgcaaaagtcaaatataataagtagagcgaaagtgtacataattcagtgagaaagataaaaaaatgatccagacatatataa 43761824  T
Q  208 gctacacttcattacaaagggaagaataccagttttttcttatatagaaaacatgaacattcaaaatctgtaaaacttaccagagaagaatatgatttta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43761823 gctacacttcattacaaagggaagaataccagttttttcttatatagaaaacatgaacattcaaaatctgtaaaacttaccagagaagaatatgatttta 43761724  T
Q  308 acatcggcttggtaagctgccaaattggttt 338  Q
    |||||||||||||||||||||||||||||||    
T  43761723 acatcggcttggtaagctgccaaattggttt 43761693  T

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