View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077-Insertion-5 (Length: 378)
Name: NF5077-Insertion-5
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 13038128 - 13037984
Alignment:
| Q |
8 |
tcaggtacctctaatatcattaggaacctgacatcaaaaaattttaatgaagactaattaagcttttataatcatcgccctttggtgttgtagttctctt |
107 |
Q |
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| T |
13038128 |
tcaggtacctctaattccattaggaacctgacattaaaattgtttaatgaagactaattaagcttttataatcatcgccctttggtgttttaattctctt |
13038029 |
T |
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| Q |
108 |
tcatgaccttctacgaagatttgttccataaaatgagtgttattg |
152 |
Q |
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| T |
13038028 |
tcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13037984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 13108136 - 13107992
Alignment:
| Q |
8 |
tcaggtacctctaatatcattaggaacctgacatcaaaaaattttaatgaagactaattaagcttttataatcatcgccctttggtgttgtagttctctt |
107 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
13108136 |
tcaggtacctctaattccattaggaacctgacattaaaattgtttaatgaagactaattaagcttttataatcatcgccctttggtgttttaattctctt |
13108037 |
T |
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| Q |
108 |
tcatgaccttctacgaagatttgttccataaaatgagtgttattg |
152 |
Q |
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| T |
13108036 |
tcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13107992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 13037652 - 13037573
Alignment:
| Q |
300 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttc |
378 |
Q |
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| T |
13037652 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttc |
13037573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 13107660 - 13107581
Alignment:
| Q |
300 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttc |
378 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13107660 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttc |
13107581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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