View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077-Insertion-6 (Length: 334)
Name: NF5077-Insertion-6
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 35577396 - 35577723
Alignment:
| Q |
8 |
ccattagccctatagatcaaattcattacattcaaagtaattatagaaacaaaaaggaaaaataactaattgaaatgaccaatttagtttcaattcaata |
107 |
Q |
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| T |
35577396 |
ccattagccctatagaacacattcattacattcaaagtaattatagaaacaaaaaggaaaaataactaattgaaatgaccaatttagtttcaattcaata |
35577495 |
T |
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| Q |
108 |
gtgtgtgtcccattggttgtctcagtaagatacaagcacaagcacgcacctaccacacccttaaccactaaatctttctcccaaaccatgcagcatgagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35577496 |
gtgtgtgtcccattggttgtctcagtaagatacaagcacaagcacgcacctaccacacccttaaccactaaatctttctcccaaaccatgcagcatgagg |
35577595 |
T |
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| Q |
208 |
ggctccaaccaacatattcatgggcaccatccctatgccacatcaaccacttcccttaattcatcattaaaagcaggaaacataaagatg-cctctatcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
35577596 |
ggctccaaccaacatattcatgggcaccatccctatgccacatcaaccacttcccttaattcatcattaaaagcaggaaacataaagatgccccctatcc |
35577695 |
T |
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| Q |
307 |
ccacnnnnnnncattcaataaggcaccc |
334 |
Q |
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|||| ||||||||||||||||| |
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| T |
35577696 |
ccactttttttcattcaataaggcaccc |
35577723 |
T |
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