View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5077-Insertion-9 (Length: 653)

Name: NF5077-Insertion-9
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5077-Insertion-9
NF5077-Insertion-9
[»] chr7 (10 HSPs)
chr7 (8-653)||(17718074-17718719)
chr7 (8-616)||(17708250-17708858)
chr7 (8-606)||(17699141-17699739)
chr7 (8-606)||(16722127-16722725)
chr7 (8-616)||(17735904-17736512)
chr7 (381-616)||(17736860-17737095)
chr7 (8-281)||(17745085-17745357)
chr7 (480-616)||(16730588-16730724)
chr7 (621-653)||(16730744-16730776)
chr7 (621-653)||(17708878-17708910)
[»] chr3 (37 HSPs)
chr3 (31-411)||(46479790-46480170)
chr3 (90-406)||(46539056-46539372)
chr3 (36-411)||(46497953-46498328)
chr3 (90-416)||(46544531-46544857)
chr3 (32-394)||(46236553-46236921)
chr3 (31-128)||(46473929-46474026)
chr3 (31-128)||(46484048-46484145)
chr3 (97-251)||(4613744-4613898)
chr3 (31-145)||(46531919-46532033)
chr3 (213-326)||(5160456-5160569)
chr3 (303-396)||(46548763-46548856)
chr3 (471-571)||(46480224-46480324)
chr3 (477-564)||(5160714-5160801)
chr3 (90-145)||(46554195-46554250)
chr3 (300-394)||(16025753-16025847)
chr3 (471-541)||(51944321-51944391)
chr3 (31-128)||(46490709-46490806)
chr3 (472-561)||(46498380-46498469)
chr3 (11-127)||(46549016-46549132)
chr3 (97-244)||(4581294-4581441)
chr3 (471-564)||(5156676-5156769)
chr3 (304-394)||(45883498-45883585)
chr3 (471-571)||(46491137-46491237)
chr3 (42-133)||(5160285-5160376)
chr3 (471-514)||(46539443-46539486)
chr3 (471-514)||(46544915-46544958)
chr3 (273-388)||(47397076-47397191)
chr3 (356-395)||(51944218-51944257)
chr3 (357-411)||(4581133-4581187)
chr3 (357-411)||(4613590-4613644)
chr3 (357-395)||(5160603-5160641)
chr3 (35-137)||(51943894-51943996)
chr3 (42-127)||(5156256-5156341)
chr3 (300-329)||(5156514-5156543)
chr3 (357-394)||(5156574-5156611)
chr3 (465-566)||(46532338-46532439)
chr3 (474-514)||(16025912-16025952)
[»] chr8 (5 HSPs)
chr8 (89-397)||(21463949-21464257)
chr8 (273-394)||(9692480-9692601)
chr8 (274-394)||(9675458-9675578)
chr8 (472-562)||(21463784-21463874)
chr8 (14-126)||(9692748-9692860)
[»] chr4 (4 HSPs)
chr4 (14-162)||(35162422-35162569)
chr4 (274-388)||(35162681-35162795)
chr4 (31-160)||(35155418-35155547)
chr4 (31-127)||(15556012-15556108)
[»] chr5 (1 HSPs)
chr5 (468-536)||(30802073-30802141)


Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 653
Target Start/End: Original strand, 17718074 - 17718719
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  17718074 caagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttactttttt 17718173  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17718174 cttcccgatgcaaaagatgggttgtccgctttgattgataatgtaacttctgattatgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 17718273  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718274 gcaagttcaggattccaagattcaatatttcttttgagattgaagctcctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 17718373  T
Q  308 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgca 407  Q
    |||||||||||||||||||||||||||||||||| | | |||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||    
T  17718374 gacaaaaatggtggactctcctataagtcaagaaatatttgtttccgacatacttcagaagtcttgcattgaagtaaacgaagaaggtacaaaagctgca 17718473  T
Q  408 gcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtagctgaccacccttttttatttctgatca 507  Q
    ||||||||||||||||||  ||||  |||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718474 gcggtgaccgttagcatgttatgcgggtgttctcggtatagtccccctccgccccctccaatcgactttgtagctgaccacccttttttatttctgatca 17718573  T
Q  508 gagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattccatagtatcttaaatatgttttctaag 607  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17718574 gagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattcttgaattccatagcatcttaaatatgttttctaag 17718673  T
Q  608 caacccattacgtcctatttcttattcttatactatctgaaatata 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17718674 caacccattacgtcctatttcttattcttatactatctgaaatata 17718719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 17708250 - 17708858
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  17708250 caagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttactttttt 17708349  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  17708350 cttcccgatgcaaaagatgggttgtcagctttgattgatacggtagcttctaattctgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 17708449  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708450 gcaagttcaggattccaagattcaatatttcttttaagattgaagcttctaagttactaaagaaattaggattgactttacctttttctatgggaggttt 17708549  T
Q  308 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17708550 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgca 17708649  T
Q  408 gcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtagctgaccacccttttttatttctgatca 507  Q
    || | ||||| | |||| | || |   ||| || ||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17708650 gcagcgaccgctggcatagtatacggatgttctccgtatagaccccctccgctccctccaatggactttgttgctgaccacccttttttatttctgatca 17708749  T
Q  508 gagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattccatagtatcttaaatatgttttctaag 607  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17708750 gagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaattccatagtatcttaaatatgttttctaag 17708849  T
Q  608 caacccatt 616  Q
    |||||||||    
T  17708850 caacccatt 17708858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Original strand, 17699141 - 17699739
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||    
T  17699141 caagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttactttttt 17699240  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    ||||| ||   ||||||||||||||||  | |||||||||| |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  17699241 cttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctcgtagaaaagtggaagtag 17699340  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  17699341 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggttt 17699440  T
Q  308 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17699441 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgca 17699540  T
Q  408 gcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtagctgaccacccttttttatttctgatca 507  Q
    ||||||||||||||| |   || |  | || ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699541 gcggtgaccgttagcttcatatcctcgcgttctcggtatagtccccctccgccccctccaatcgactttgtagctgaccacccttttttatttctgatca 17699640  T
Q  508 gagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattccatagtatcttaaatatgttttctaa 606  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  17699641 gagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttaattgttgaattccatagtatctcaaatatgttttctaa 17699739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Original strand, 16722127 - 16722725
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||    
T  16722127 caagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttactttttt 16722226  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    ||||| ||   ||||||||||||||||  | |||||||||| |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  16722227 cttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctcgtagaaaagtggaagtag 16722326  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  16722327 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggttt 16722426  T
Q  308 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16722427 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgca 16722526  T
Q  408 gcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtagctgaccacccttttttatttctgatca 507  Q
    || | ||||| | |||| | || |   ||| || ||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16722527 gcagcgaccgctggcatagtatacggatgttctccgtatagaccccctccgctccctccaatggactttgttgctgaccacccttttttatttctgatca 16722626  T
Q  508 gagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattccatagtatcttaaatatgttttctaa 606  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  16722627 gagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttaattgttgaattccatagtatctcaaatatgttttctaa 16722725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 17735904 - 17736512
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17735904 caagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttactttttt 17736003  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    ||||| || | ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||||||||   ||||  ||||||    
T  17736004 cttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtag 17736103  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggttt 307  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||    
T  17736104 gcaagttcatgattccaagattcaatatttcttttgagattgaagcttctgagttattaaataaattaggattgactttacctttttcgaagggaggttt 17736203  T
Q  308 gacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgca 407  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  17736204 gacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgca 17736303  T
Q  408 gcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtagctgaccacccttttttatttctgatca 507  Q
    |||    ||  | |||   || ||     |||| | | | ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17736304 gcgacagcccgtggcagtacaggcggcgctgctccatttcgtctccctccgccccctccaatcgactttgttgctgaccacccttttttatttctgatca 17736403  T
Q  508 gagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattccatagtatcttaaatatgttttctaag 607  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||     
T  17736404 gagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaattccatagtatctcaaatatgttttctaaa 17736503  T
Q  608 caacccatt 616  Q
     ||||||||    
T  17736504 taacccatt 17736512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 381 - 616
Target Start/End: Original strand, 17736860 - 17737095
Alignment:
Q  381 gtaaatgaagaaggtacaaaagctgcagcggtgaccgttagcatggcatgcaagtgtgctgcgtatagtccccctcctccccctccaatcgactttgtag 480  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||  ||||  |||| ||  ||||||||||||||| ||||||||||||||||||||||    
T  17736860 gtaaacgaagaaggtacaaaagctgcagcggtgaccgttagcgtgttatgcgggtgttctcggtatagtccccctccgccccctccaatcgactttgtag 17736959  T
Q  481 ctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaattc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  17736960 ctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaattc 17737059  T
Q  581 catagtatcttaaatatgttttctaagcaacccatt 616  Q
    ||||||||||||||||||||||||||||||||||||    
T  17737060 catagtatcttaaatatgttttctaagcaacccatt 17737095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 17745085 - 17745357
Alignment:
Q  8 caagaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttactttttt 107  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||||||| | ||||||||||| |||| |||||||||||| ||||||||||||    
T  17745085 caagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttcct-ataaacaaggcaaagatgggcgtgcattctctatttactttttt 17745183  T
Q  108 cttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtag 207  Q
    ||||| || | ||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||| || |||||||||  | ||||  ||||||    
T  17745184 cttcctgacgaaaaagatggtttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtgaagaagtccaagtag 17745283  T
Q  208 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17745284 gcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattg 17745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 480 - 616
Target Start/End: Original strand, 16730588 - 16730724
Alignment:
Q  480 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgattcttgaatt 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  16730588 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt 16730687  T
Q  580 ccatagtatcttaaatatgttttctaagcaacccatt 616  Q
    |||||||||||||||||||||||||||||||||||||    
T  16730688 ccatagtatcttaaatatgttttctaagcaacccatt 16730724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 653
Target Start/End: Original strand, 16730744 - 16730776
Alignment:
Q  621 cctatttcttattcttatactatctgaaatata 653  Q
    |||||||||||||||||||||||||||||||||    
T  16730744 cctatttcttattcttatactatctgaaatata 16730776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 653
Target Start/End: Original strand, 17708878 - 17708910
Alignment:
Q  621 cctatttcttattcttatactatctgaaatata 653  Q
    |||||||||||||||||||||||||||||||||    
T  17708878 cctatttcttattcttatactatctgaaatata 17708910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 31 - 411
Target Start/End: Original strand, 46479790 - 46480170
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggtt 130  Q
    |||||||||||||||||||||| ||||||||||| || |||||| | ||| |||||  |||| |||| ||||||||||||||  ||||||||||||||||    
T  46479790 cttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggtt 46479889  T
Q  131 gtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattc 230  Q
    | ||||| || | || || || |||||||| || ||| |  || ||||||| |||||   | | ||||||||||||||  | || ||||||||||  |||    
T  46479890 ggcagctttggtcgaaaaggtggcttctgaatctgagctactgcaacacaagcttccatttggtaaagtggaagtaggtgactttaggattccaaagttc 46479989  T
Q  231 aatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctccta 330  Q
    |||||||| ||||   ||||| |||||||  | |||||| |  ||||  ||  ||||||||| |||   |||||| ||||||| |||||| ||||| |      
T  46479990 aatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactcttcag 46480089  T
Q  331 taagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgcagcgg 411  Q
    | |||||| | |||| |||||||   |||||||| ||||||||||||||||||||||||||||| ||  ||||||| ||||    
T  46480090 ttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctgctgcgg 46480170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 90 - 406
Target Start/End: Original strand, 46539056 - 46539372
Alignment:
Q  90 ttctccatttacttttttcttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctc 189  Q
    ||||| || |||||||||||||| ||||||||||||||||||| |||| |||  || || ||||||||||| || || ||| ||||||  |    ||||     
T  46539056 ttctctatgtacttttttcttcctgatgcaaaagatgggttgttagctttgaccgaaaaggtagcttctgaatctgaatttctggaacgtacgtgtccta 46539155  T
Q  190 gtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacc 289  Q
        || ||||  ||||||  | ||||| |||||||||||||| |||||||||||| ||||| ||||| |  | || ||| |  ||||| ||  ||||||    
T  46539156 aacaaacagtgcgagtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacc 46539255  T
Q  290 tttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaa 389  Q
    ||| |||   ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||   |||| || |||||||| |||||||||||||||    
T  46539256 tttctctcaaggaggtttgacaaaaatggtggactctcctacaagtcaaaacctttatgtttccgatgtattccacaagtcttttattgaagtaaatgaa 46539355  T
Q  390 gaaggtacaaaagctgc 406  Q
     |||| || ||||||||    
T  46539356 caaggaaccaaagctgc 46539372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 36 - 411
Target Start/End: Original strand, 46497953 - 46498328
Alignment:
Q  36 gatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttgtcag 135  Q
    |||| ||||||||||||||| |||||||| || |||||| | ||  |||||  |||  | || ||||||||||||||  |||||||||||||| || ||     
T  46497953 gatgattttaaagttcttggccttccttataagcaaggcgaagacaagcgtcaatttacgatgtacttttttcttccaaatgcaaaagatgggctgccaa 46498052  T
Q  136 ctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattcaatat 235  Q
    || || |||| ||  | ||||| || || |||||  || ||||||| ||||||| |   ||||||||||||||  | || ||||||||||| ||||||||    
T  46498053 ctttgcttgagaagcttgcttccgaatctgagttactgcaacacaagcttcctcttgacaaagtggaagtaggtgactttaggattccaaggttcaatat 46498152  T
Q  236 ttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagt 335  Q
    ||| |||||  ||||| |||||||  |  ||||| |  | ||  ||  ||| |||||  |||  ||||||||||| ||||||||| ||||| || | |||    
T  46498153 ttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatggtgaactctgctgtgagt 46498252  T
Q  336 caagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgcagcgg 411  Q
    ||| | ||||||||||||   ||||| || ||||||||||||||||||||||||||||| || |||||||| ||||    
T  46498253 caaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgcgg 46498328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 90 - 416
Target Start/End: Original strand, 46544531 - 46544857
Alignment:
Q  90 ttctccatttacttttttcttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctc 189  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| |||| ||| ||| || ||||||||||| || |||||| | ||||| |  | ||||     
T  46544531 ttctctatttacttttttcttcctgatgcaaaagatgggttgttagctttgactgaaaaggtagcttctgaatctgagtttctagaacatacacgtccta 46544630  T
Q  190 gtagaaa-agtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttac 288  Q
    | ||||| ||||  ||||||  | || || ||||| | |||||||||| |||||| | ||||| ||||||   | || ||| |  ||||| ||  |||||    
T  46544631 g-agaaacagtgatagtaggtgacttaagaattccgaaattcaatattgcttttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttac 46544729  T
Q  289 ctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatga 388  Q
    |||| ||||  |||||||||||||| |||||||||||||||||   |||| | ||| || |||||  |||||| || |||||||| ||||||||||||||    
T  46544730 ctttctctacaggaggtttgacaaatatggtggactctcctatggatcaaaaccttcatatttccaacatattccacaagtcttttattgaagtaaatga 46544829  T
Q  389 agaaggtacaaaagctgcagcggtgacc 416  Q
    | | || ||  ||||||| |||||||||    
T  46544830 aaagggaactgaagctgctgcggtgacc 46544857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 394
Target Start/End: Complemental strand, 46236921 - 46236553
Alignment:
Q  32 ttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttg 131  Q
    ||||||||||| ||||||||||  ||||||||| || |||||||| |||||| ||  |||||| || ||  |||||||||| ||||||||||||||||||    
T  46236921 ttttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttg 46236822  T
Q  132 tcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctc---gtagaaaagtggaagtaggcaagttcaggattccaagat 228  Q
    ||| |  || |||| ||  | |||||||| |  |||||    ||||||||||||||||    || ||||||||  |||||  |||||| |||||||||||    
T  46236821 tcaaccttggttgagaagctggcttctgaatttgagttaccagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagat 46236722  T
Q  229 tcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcc 328  Q
    |||||||||| ||||  |||||| || || |     | ||| | |||||| ||| ||||||||| |||   |||||||| |||||||| ||||| ||| |    
T  46236721 tcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattgtggattcttc 46236622  T
Q  329 tat---aagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 394  Q
    | |     || || | || |||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  46236621 ttttgagggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaagg 46236553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 46473929 - 46474026
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatggg 128  Q
    |||||||||||||||||||||||||||||||||| || |||||| | ||| |||||   ||| | || ||||||||||||||  ||||||||||||||    
T  46473929 cttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatggg 46474026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 46484048 - 46484145
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatggg 128  Q
    |||||||||||||||||||||||||||||||||| || |||||| | ||| |||||   ||| | || ||||||||||||||  ||||||||||||||    
T  46484048 cttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatggg 46484145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 4613898 - 4613744
Alignment:
Q  97 tttacttttttcttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaa 196  Q
    ||||| |||||||||| |||||| ||||||| |||| || | ||||||| ||  ||||||| || |  ||||||||  ||||||| |||||| || ||||    
T  4613898 tttacctttttcttcctgatgcagaagatggattgttagatttgattgagaagctagcttccgaatttgagtttttacaacacaagcttcctagtcgaaa 4613799  T
Q  197 agtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaa 251  Q
    |||  |||| || |  ||| ||||||||||| ||||||||||||||||| |||||    
T  4613798 agttaaagttggtaccttccggattccaagactcaatatttcttttgagcttgaa 4613744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 46531919 - 46532033
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggtt 130  Q
    ||||||||||||||||  | ||| |||||||||| || |||||||| |||   |||  |||||| || ||||||||||||||||||||| ||||||| ||    
T  46531919 cttttgatggttttaagatccttcgtcttccttataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcccgatgcacaagatggatt 46532018  T
Q  131 gtcagctatgattga 145  Q
    || |||| |||||||    
T  46532019 gttagctttgattga 46532033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 5160456 - 5160569
Alignment:
Q  213 ttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaa 312  Q
    ||||| |||||||||||||| ||||| |||||| ||||| |||||||  | || ||| | |||||| |||||||||||||  ||   | |||||||||||    
T  5160456 ttcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaa 5160555  T
Q  313 aaatggtggactct 326  Q
    ||||||||||||||    
T  5160556 aaatggtggactct 5160569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 396
Target Start/End: Complemental strand, 46548856 - 46548763
Alignment:
Q  303 ggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggta 396  Q
    |||||||||||||||||| ||||||||||   | || | |||||||||||    |||||||| |||||||||||||||||||| ||||||||||    
T  46548856 ggtttgacaaaaatggtgaactctcctattgataaatacctttatgtttctaaaatatttcacaagtctttcattgaagtaaaagaagaaggta 46548763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 571
Target Start/End: Original strand, 46480224 - 46480324
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgat 570  Q
    ||||||||||||||||||||||| |||||| |||| |||||||| || |  ||||| ||  ||||||||||  ||||| |||||||||||| ||| ||||    
T  46480224 gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat 46480323  T
Q  571 t 571  Q
    |    
T  46480324 t 46480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 564
Target Start/End: Original strand, 5160714 - 5160801
Alignment:
Q  477 gtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatg 564  Q
    ||||||||||||||||| ||||||||||| |||||||| |  | ||||||||| |||||||||||  | ||  |||||||||||||||    
T  5160714 gtagctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg 5160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 46554250 - 46554195
Alignment:
Q  90 ttctccatttacttttttcttcccgatgcaaaagatgggttgtcagctatgattga 145  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||    
T  46554250 ttctctatgtactttttacttcccgatgcaaaagatgggttgtcagctttgattga 46554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 16025753 - 16025847
Alignment:
Q  300 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 394  Q
    ||||||||||||||||||||||||| || |  |  |||||| || | ||||||  |||||||||| || |||||||| |||||||||||||||||    
T  16025753 ggaggtttgacaaaaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaaatctttcatcgaagtaaatgaagaagg 16025847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 51944321 - 51944391
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgg 541  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| || | |||||| ||  ||||||||||    
T  51944321 gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttgg 51944391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 46490709 - 46490806
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatggg 128  Q
    |||| |||| ||||||||||||||| |||||||| || |||||| | ||| |||||| |||  | || ||||||||||||||  ||||||||||||||    
T  46490709 ctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtgaatttactatgtacttttttcttccaaatgcaaaagatggg 46490806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 561
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
Q  472 actttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttg 561  Q
    ||||||||||||||||||| || |||||| | ||||||||||| || |  ||||| ||  ||||||||||| ||||| ||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg 46498469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 46549132 - 46549016
Alignment:
Q  11 gaatgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttctt 110  Q
    |||||||||||| ||||||  |||||||||||| |||||||||  ||||||||| ||| |||| || ||| | ||   |||||| || ||||||||||||    
T  46549132 gaatgatcagtttatcagtgtttttgatggtttcaaagttctttatcttccttataaataaggaaaagataaacgacaattctctatgtacttttttctt 46549033  T
Q  111 cccgatgcaaaagatgg 127  Q
    ||  || ||||||||||    
T  46549032 ccaaatacaaaagatgg 46549016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 4581441 - 4581294
Alignment:
Q  97 tttacttttttcttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcctcgtagaaa 196  Q
    ||||| |||||||||| |||||| ||||||| |||| || | ||||||| ||  ||||||| || |  |||| |||  ||||||| |||||| || ||||    
T  4581441 tttacctttttcttcctgatgcagaagatggattgttagatttgattgagaagctagcttccgaatttgagtatttacaacacaagcttcctagtcgaaa 4581342  T
Q  197 agtggaagtaggcaagttcaggattccaagattcaatatttcttttga 244  Q
    |||  |||| ||    ||| ||||||||||||||||||||||||||||    
T  4581341 agttaaagttggtgccttccggattccaagattcaatatttcttttga 4581294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 564
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatg 564  Q
    |||||||||||||| |||||||| |||||||| || |||||| | |  | ||||||||| |||||||||||  | ||| ||||||| |||||||    
T  5156676 gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg 5156769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 45883585 - 45883498
Alignment:
Q  304 gtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 394  Q
    ||||||||||||||||||||| |||   || |||||| |||||| ||||   ||| |||||  |||||||||||||||| |||||||||||    
T  45883585 gtttgacaaaaatggtggactatcc---aaatcaagacctttatatttctcacatttttcactagtctttcattgaagttaatgaagaagg 45883498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 571
Target Start/End: Original strand, 46491137 - 46491237
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatggttgat 570  Q
    |||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||  ||||| |||||||||||| ||| ||||    
T  46491137 gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 46491236  T
Q  571 t 571  Q
    |    
T  46491237 t 46491237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 5160285 - 5160376
Alignment:
Q  42 tttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttgtc 133  Q
    |||||||||||| ||||||| || ||  ||||||| ||| ||||| ||||||| || ||| |||| |||||  ||||||||||||| |||||    
T  5160285 tttaaagttcttcgtcttccgtataagaaaggcaaagataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtc 5160376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Original strand, 46539443 - 46539486
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaaga 514  Q
    ||||||||||||||||||||||| || ||| |||||||||||||    
T  46539443 gactttgtagctgaccaccctttcttgtttttgatcagagaaga 46539486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Original strand, 46544915 - 46544958
Alignment:
Q  471 gactttgtagctgaccacccttttttatttctgatcagagaaga 514  Q
    ||||||||||||||||||||||| || ||| |||||||||||||    
T  46544915 gactttgtagctgaccaccctttcttgtttttgatcagagaaga 46544958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 47397191 - 47397076
Alignment:
Q  273 ttaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctt 372  Q
    |||||| ||| ||||||||| ||  | |||||||| ||||||||| |||||| ||      ||||| | |||| |||||||  |||||||||||||| ||    
T  47397191 ttaggagtgattttacctttctccctcggaggtttaacaaaaatgatggactttctagcgggtcaaaacctttttgtttccaacatatttcagaagtatt 47397092  T
Q  373 tcattgaagtaaatga 388  Q
    ||||||||||||||||    
T  47397091 tcattgaagtaaatga 47397076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 51944218 - 51944257
Alignment:
Q  356 catatttcagaagtctttcattgaagtaaatgaagaaggt 395  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  51944218 catatttcacaaatctttcattgaagtaaatgaagaaggt 51944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 4581187 - 4581133
Alignment:
Q  357 atatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgcagcgg 411  Q
    |||||||| |||||||| |||||||||||||||| ||||||  ||||||| ||||    
T  4581187 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcgg 4581133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 4613644 - 4613590
Alignment:
Q  357 atatttcagaagtctttcattgaagtaaatgaagaaggtacaaaagctgcagcgg 411  Q
    |||||||| |||||||| |||||||||||||||| ||||||  ||||||| ||||    
T  4613644 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcgg 4613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 5160603 - 5160641
Alignment:
Q  357 atatttcagaagtctttcattgaagtaaatgaagaaggt 395  Q
    |||||||| || |||||||||||||||||||||||||||    
T  5160603 atatttcacaaatctttcattgaagtaaatgaagaaggt 5160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 51943894 - 51943996
Alignment:
Q  35 tgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggttgtca 134  Q
    ||||| |||||||||||||  ||||||||| ||  ||||  | ||| ||||   |||||| || || |||||||||||  ||||||||||||||||||||    
T  51943894 tgatgattttaaagttcttcatcttccttataagaaaggtgaagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatgggttgtca 51943993  T
Q  135 gct 137  Q
    |||    
T  51943994 gct 51943996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 5156256 - 5156341
Alignment:
Q  42 tttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 127  Q
    |||||||||||| ||||||| || ||| ||||||| ||| |||||  |||||| || ||| ||||||||||  |||| ||||||||    
T  5156256 tttaaagttcttcgtcttccgtataaaaaaggcaaagataagcgtcgattctctatgtacatttttcttccaaatgctaaagatgg 5156341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Original strand, 5156514 - 5156543
Alignment:
Q  300 ggaggtttgacaaaaatggtggactctcct 329  Q
    ||||||||||||||||||||||||||||||    
T  5156514 ggaggtttgacaaaaatggtggactctcct 5156543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 5156574 - 5156611
Alignment:
Q  357 atatttcagaagtctttcattgaagtaaatgaagaagg 394  Q
    |||||||| || ||||||||||||||||||||||||||    
T  5156574 atatttcacaaatctttcattgaagtaaatgaagaagg 5156611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 566
Target Start/End: Original strand, 46532338 - 46532439
Alignment:
Q  465 ccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttgatg 564  Q
    ||||| |||||||||||||||||||||||  | ||| |||| ||||| || ||   ||| || ||||||||||||||  | ||| |||||||||||| ||    
T  46532338 ccaatagactttgtagctgaccaccctttcatgtttttgataagagacgatttgtctggtacaatactctttgttggccaagtgctcaatcctcttgttg 46532437  T
Q  565 gt 566  Q
    ||    
T  46532438 gt 46532439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 16025912 - 16025952
Alignment:
Q  474 tttgtagctgaccacccttttttatttctgatcagagaaga 514  Q
    |||||||||||||||||||| |||||||| || ||||||||    
T  16025912 tttgtagctgaccaccctttcttatttctaattagagaaga 16025952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 397
Target Start/End: Complemental strand, 21464257 - 21463949
Alignment:
Q  89 attctccatttacttttttcttcccgatgcaaaagatgggttgtcagctatgattgataatgtagcttctgattccgagtttttggaacacaatcttcct 188  Q
    |||||| ||||||||||||||||| |||||||||||||| |||| |||| ||||| | || || ||||| || ||  ||||||||||||| || ||||||    
T  21464257 attctcaatttacttttttcttcctgatgcaaaagatggattgttagctttgattaagaaggttgcttccgaatctaagtttttggaacaaaagcttcct 21464158  T
Q  189 cgtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttac 288  Q
    |||  |  ||||||||| ||  | ||||||||||| | |||||| |||||||||| | |||||  ||||||  | || ||  |  ||||  ||  |||||    
T  21464157 cgtgaattagtggaagttggtgacttcaggattccgaaattcaagatttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttac 21464058  T
Q  289 ctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatga 388  Q
    |||| |||   |||| |||||||||||||||||||||||  ||   |||| | |||||||| |||  ||||||||| |||||||| ||||||||||| ||    
T  21464057 ctttctctgaaggagctttgacaaaaatggtggactctcgaattgctcaaaacctttatgtgtccaacatatttcacaagtcttttattgaagtaaacga 21463958  T
Q  389 agaaggtac 397  Q
    |||||||||    
T  21463957 agaaggtac 21463949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 9692601 - 9692480
Alignment:
Q  273 ttaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctt 372  Q
    |||||| ||| ||||||||| |||   |||||||||||||||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||    
T  9692601 ttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctt 9692502  T
Q  373 tcattgaagtaaatgaagaagg 394  Q
    ||||||||||||| || |||||    
T  9692501 tcattgaagtaaacgaggaagg 9692480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 9675578 - 9675458
Alignment:
Q  274 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtcttt 373  Q
    ||||| ||| ||||||||| |||   |||||||||||||||||||||||||||| |  | |||||||  ||| |||||||  ||||||||| ||||||      
T  9675578 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctac 9675479  T
Q  374 cattgaagtaaatgaagaagg 394  Q
    ||||||||||||||| |||||    
T  9675478 cattgaagtaaatgaggaagg 9675458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 562
Target Start/End: Complemental strand, 21463874 - 21463784
Alignment:
Q  472 actttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttgggaaggtggtcaatcctcttga 562  Q
    |||| |||||||| |||||||| || ||| ||||||||||||| ||    ||||||||||||||| ||||| | ||| |||||||||||||    
T  21463874 acttcgtagctgatcaccctttcttgtttttgatcagagaagatttgtccggaaccatactctttattgggcaagtgctcaatcctcttga 21463784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 9692860 - 9692748
Alignment:
Q  14 tgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttccc 113  Q
    ||||||||| || ||  ||||||||||||||||||||||| |||||||||| ||  |||| ||  || ||||   |||||| || ||| ||||||||||     
T  9692860 tgatcagtttattagagcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttcca 9692761  T
Q  114 gatgcaaaagatg 126  Q
     ||||||||||||    
T  9692760 aatgcaaaagatg 9692748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 35162422 - 35162569
Alignment:
Q  14 tgatcagttgatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttccc 113  Q
    ||||||||| || ||  ||||||||||||||||||||||| |||||||||| || ||||| || ||||||||   |||||| || |||  |||||||||     
T  35162422 tgatcagtttattagagcttttgatggttttaaagttcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtac-attttcttcca 35162520  T
Q  114 gatgcaaaagatgggttgtcagctatgattgataatgtagcttctgatt 162  Q
     |||||||||||||  |||||||| || |||| || || ||||||||||    
T  35162521 aatgcaaaagatggcctgtcagctttggttgagaaggtggcttctgatt 35162569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 35162681 - 35162795
Alignment:
Q  274 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtcttt 373  Q
    ||||| ||| ||||||||| |||   |||||||||||||||||||||||||| | |  | ||||| | ||||  ||||||  ||||||||| ||||||||    
T  35162681 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttcacaagtcttt 35162780  T
Q  374 cattgaagtaaatga 388  Q
    |||||||||||||||    
T  35162781 cattgaagtaaatga 35162795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 35155418 - 35155547
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgggtt 130  Q
    ||||||||||||||||||||||| ||||||| || || ||||| || ||||||||   |||||| || ||| ||||||||||  |||||||||||||  |    
T  35155418 cttttgatggttttaaagttcttcgtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggact 35155517  T
Q  131 gtcagctatgattgataatgtagcttctga 160  Q
     |||||| || |||| || || ||||||||    
T  35155518 atcagctttggttgagaaggtggcttctga 35155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 15556012 - 15556108
Alignment:
Q  31 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaatgatgagcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 127  Q
    ||||||||||||| ||||| ||| |||||| ||| ||||||||| |  |||| ||   |||||| || |||||| ||||||| ||||||||||||||    
T  15556012 cttttgatggtttcaaagtactttgtcttcattataaacaaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatgg 15556108  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 30802073 - 30802141
Alignment:
Q  468 atcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactcttt 536  Q
    |||||||||||||  || |||||||| |||||| | || |||| ||| ||||||||||| |||||||||    
T  30802073 atcgactttgtagtagatcaccctttattattttttataagagcagaatttagtggaacgatactcttt 30802141  T

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