View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_high_1 (Length: 623)
Name: NF5077_high_1
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 13879297 - 13878786
Alignment:
| Q |
11 |
cagagaagtagttttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
110 |
Q |
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| T |
13879297 |
cagagaagtagtattttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
13879198 |
T |
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| Q |
111 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
210 |
Q |
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| T |
13879197 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
13879098 |
T |
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| Q |
211 |
ctagttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcatt |
310 |
Q |
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| T |
13879097 |
ctagttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcatt |
13878998 |
T |
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| Q |
311 |
aaatttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttttaattttcaggtgcat |
410 |
Q |
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| T |
13878997 |
aaatttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttt---------------- |
13878914 |
T |
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| Q |
411 |
gctaaacaaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctg |
510 |
Q |
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| T |
13878913 |
--taaaccaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctg |
13878816 |
T |
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| Q |
511 |
aggcttttaatgtgtgaatgaatcagagta |
540 |
Q |
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| T |
13878815 |
aggcttttaatgtgtgaatgaatcagagta |
13878786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
272 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
334 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
142 |
taccaattgctatcaatcaatattataaatatatgatta |
180 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 13874629 - 13874571
Alignment:
| Q |
543 |
tatttttccttaccactacaagtgattaatggcctcattt-cgttgttaattgtgttta |
600 |
Q |
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| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgttta |
13874571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
19 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
100 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 600
Target Start/End: Original strand, 12957643 - 12957676
Alignment:
| Q |
567 |
attaatggcctcatttcgttgttaattgtgttta |
600 |
Q |
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| T |
12957643 |
attaatggcctcatttccttgttaattgtgttta |
12957676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 13884566 - 13884522
Alignment:
| Q |
556 |
cactacaagtgattaatggcctcatttcgttgttaattgtgttta |
600 |
Q |
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| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgttta |
13884522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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