View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_high_12 (Length: 239)
Name: NF5077_high_12
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30629292 - 30629068
Alignment:
| Q |
1 |
ccattgttttgctcaattacaatcaaggttgtagcctttaataatcacgaggtatctttgactatccaaaagtatatatacttcctaacnnnnnnnngta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
30629292 |
ccattgttttgctcaattacaatcaaggttgtagcctttaataatcacgaggtatctttgactacccaaaagtatatatacttcctaacaaaaaaaagta |
30629193 |
T |
|
| Q |
101 |
tatatacatttttaataaatttagctac-ttcaaaatatacatttatctatccaaacaagttcattgatcgaaagagatataacaagaactatagagaga |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30629192 |
tatatacatttttaataaatttagctaccttcaaaata--catttatctatccaaacaagttcgttgatcgaaagagatataacaagaactatagagaga |
30629095 |
T |
|
| Q |
200 |
aa--gagatatttctggtaataaaaat |
224 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
30629094 |
aagagagatatttctggtaataaaaat |
30629068 |
T |
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