View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_high_5 (Length: 426)
Name: NF5077_high_5
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 7035868 - 7036268
Alignment:
| Q |
13 |
aaaatacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
112 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7035868 |
aaaatacagatctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaacca |
7035967 |
T |
|
| Q |
113 |
actggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattat-----tttatt |
206 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7035968 |
actggtgagcaaatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttatt |
7036067 |
T |
|
| Q |
207 |
ttattttgggtgtggagttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
7036068 |
ttattttgggtgtggagttggttgggttgcacaactagtttgagctgaggattagagttggaggccccgggtacaaacccgtgtaaaggagaaagattct |
7036167 |
T |
|
| Q |
307 |
aacaaccaattactaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036168 |
aacaaccaattactaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaa |
7036267 |
T |
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| Q |
407 |
a |
407 |
Q |
| |
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| |
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| T |
7036268 |
a |
7036268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 7897108 - 7897497
Alignment:
| Q |
13 |
aaaatacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897108 |
aaaatacacatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
7897207 |
T |
|
| Q |
113 |
actggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattattttattttatt |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
7897208 |
actggtgagcaaatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccatattat-----tttatt |
7897302 |
T |
|
| Q |
212 |
ttgggtgtggagttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||| |
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| T |
7897303 |
ttgggtgtggagttggttgggttgcacaactagtttgagctgaggattaaagttggaggccccgggtgcaaacccgtgtaaaggagaaagataccaacaa |
7897402 |
T |
|
| Q |
312 |
ccaattactaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaa |
407 |
Q |
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| T |
7897403 |
ccaattactaacattggcattttaaacaaaaaagaaaattaggacttcaaaagatt-aataaatttcaaattatctgctttgggatttctcccaaa |
7897497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
65 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
133 |
Q |
| |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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