View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5077_high_6 (Length: 364)

Name: NF5077_high_6
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5077_high_6
NF5077_high_6
[»] chr7 (6 HSPs)
chr7 (13-345)||(17717746-17718078)
chr7 (8-345)||(16721794-16722131)
chr7 (8-345)||(17698808-17699145)
chr7 (13-345)||(17707935-17708254)
chr7 (13-345)||(17735576-17735908)
chr7 (41-345)||(17744784-17745089)
[»] chr3 (20 HSPs)
chr3 (119-342)||(46544212-46544435)
chr3 (219-337)||(46538840-46538958)
chr3 (204-344)||(46490549-46490689)
chr3 (276-345)||(46483960-46484029)
chr3 (265-345)||(46473830-46473910)
chr3 (97-341)||(5160008-5160251)
chr3 (111-341)||(5155992-5156222)
chr3 (222-342)||(46554334-46554454)
chr3 (222-345)||(46531777-46531900)
chr3 (130-177)||(46549299-46549346)
chr3 (130-174)||(46526740-46526784)
chr3 (111-186)||(46479537-46479612)
chr3 (219-345)||(46479645-46479771)
chr3 (111-186)||(46497692-46497767)
chr3 (288-343)||(51943814-51943869)
chr3 (130-200)||(4614128-4614198)
chr3 (133-175)||(45902723-45902765)
chr3 (288-342)||(46549134-46549188)
chr3 (130-163)||(4581748-4581781)
chr3 (135-176)||(45884048-45884089)
[»] chr4 (4 HSPs)
chr4 (132-343)||(15555780-15555991)
chr4 (107-178)||(35155161-35155232)
chr4 (288-342)||(35155342-35155396)
chr4 (130-186)||(35162205-35162261)
[»] chr2 (1 HSPs)
chr2 (107-186)||(20358872-20358951)
[»] chr8 (2 HSPs)
chr8 (286-336)||(9675849-9675899)
chr8 (128-250)||(21464429-21464551)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 17717746 - 17718078
Alignment:
Q  13 aatatcaacaaaatgttttattattctgttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgatttgaa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17717746 aatatcaacaaaatgttttattattctgttataatgctcatgaaaaagttaaaatgatttattttaacatggataattttacaattgatactgatttgaa 17717845  T
Q  113 ggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacg 212  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17717846 ggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggctcagttcacagcttaacg 17717945  T
Q  213 agtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 312  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17717946 agtctaatatttgcaaatgcactatatttcaaaggagtgtggaaacaaccctttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 17718045  T
Q  313 actcagtaaaggttccctttatgaccagcaaga 345  Q
    | |||||||||||||||||||||||||||||||    
T  17718046 agtcagtaaaggttccctttatgaccagcaaga 17718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 16721794 - 16722131
Alignment:
Q  8 cgaagaatatcaacaaaatgttttattattctgttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgat 107  Q
    |||| |||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16721794 cgaaaaatatcaacaaaatgttttattcttgtgttataatgctcatgaaaaaattcaaatgatttattttaacatggttaattttacaattgatactgtt 16721893  T
Q  108 ttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagct 207  Q
    ||||||||| |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  16721894 ttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagct 16721993  T
Q  208 taacgagtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaa 307  Q
    ||||  | || |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  16721994 taacccgcctcatctttgctaatgcactatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaa 16722093  T
Q  308 tggcaactcagtaaaggttccctttatgaccagcaaga 345  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  16722094 tggcaagtcagtaaaggttccatttatgaccagcaaga 16722131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 17698808 - 17699145
Alignment:
Q  8 cgaagaatatcaacaaaatgttttattattctgttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgat 107  Q
    |||| |||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  17698808 cgaaaaatatcaacaaaatgttttattcttgtgttataatgctcatgaaaaaattcaaatgatttattttaacatggttaattttacaattgatactgtt 17698907  T
Q  108 ttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagct 207  Q
    ||||||||| |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  17698908 ttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagct 17699007  T
Q  208 taacgagtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaa 307  Q
    ||||  | || |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  17699008 taacccgcctcatctttgctaatgcactatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaa 17699107  T
Q  308 tggcaactcagtaaaggttccctttatgaccagcaaga 345  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  17699108 tggcaagtcagtaaaggttccatttatgaccagcaaga 17699145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 17707935 - 17708254
Alignment:
Q  13 aatatcaacaaaatgttttattattctgttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgatttgaa 112  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||             |||||||||||||||||    
T  17707935 aatatcaacaaaatgttttattattctgttataatgctcataaaaaaattcaaatgatttattttaacat-------------attgatactgatttgaa 17708021  T
Q  113 ggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   | | |||| ||||||||||     
T  17708022 ggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaacc 17708121  T
Q  213 agtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 312  Q
    || || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708122 agcctcatatttgctaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 17708221  T
Q  313 actcagtaaaggttccctttatgaccagcaaga 345  Q
    | |||||||||||||||||||||||||||||||    
T  17708222 agtcagtaaaggttccctttatgaccagcaaga 17708254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 17735576 - 17735908
Alignment:
Q  13 aatatcaacaaaatgttttattattctgttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgatttgaa 112  Q
    |||||||||||||||||| | | |||| ||||||| ||| |||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||| |    
T  17735576 aatatcaacaaaatgtttaactcttctcttataatgctcgtgaaaaaattcagatgatttattttaacatgtttaattttacaattgatactggtttgca 17735675  T
Q  113 ggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacg 212  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||||| ||| |||||||  ||||||||| ||  || | |||| ||||||||||     
T  17735676 ggctgatgaagtgataaaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaacc 17735775  T
Q  213 agtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 312  Q
    || || |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17735776 agcctcatctttgcgaatgcactatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggca 17735875  T
Q  313 actcagtaaaggttccctttatgaccagcaaga 345  Q
    | |||||||||||||||||||||||||||||||    
T  17735876 agtcagtaaaggttccctttatgaccagcaaga 17735908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 41 - 345
Target Start/End: Original strand, 17744784 - 17745089
Alignment:
Q  41 ttataatcctcatgaaaaaattaaaatgatttattttaacatggttaattttacaattgatactgatttgaaggctgatgaa-gtgagagaagaagtgaa 139  Q
    ||||||| ||| |||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| || |||||||    
T  17744784 ttataatgctcgtgaaaaaattcagatgatttattttaacatgtttaattttacaattgatacttatttgaaggctgatgaaagtgagaaaacaagtgaa 17744883  T
Q  140 tttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacgagtctaatctttgcaaatgcactatat 239  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||| ||  || | |||| |||||||||| || ||||||||||| |||||||||||     
T  17744884 tttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcctaatctttgctaatgcactatac 17744983  T
Q  240 ttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcagtaaaggttccctttatgacca 339  Q
    ||||||||||| ||| ||| |  |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  17744984 ttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttcttaacggcaagtcagtaaaggttccctttatgacca 17745083  T
Q  340 gcaaga 345  Q
    ||||||    
T  17745084 gcaaga 17745089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 342
Target Start/End: Original strand, 46544212 - 46544435
Alignment:
Q  119 tgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacgagtcta 218  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||| || ||||| ||| || | |||| ||||| ||  ||| | |||||||| |  ||     
T  46544212 tgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaagatttacttccacctgactcggttgatagcttaaccaacctc 46544311  T
Q  219 atctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcag 318  Q
    ||||||||||| |||||||| ||||||||||  |||        |||||||||||||||||| || |||||||||||| ||||||||||||||| |  ||    
T  46544312 atctttgcaaacgcactatacttcaaaggagcatggtcggaggagtttgatacttcaaaaacaaaagactatgattttaaccttctcaatggcagccaag 46544411  T
Q  319 taaaggttccctttatgaccagca 342  Q
    | |||||||| || ||||| ||||    
T  46544412 tcaaggttcctttcatgacaagca 46544435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 46538840 - 46538958
Alignment:
Q  219 atctttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcag 318  Q
    |||||||||||||||||||| ||||||||||| |||  ||    | |||||||||||||||| || |||||||||||| ||||||| ||||||| |||||    
T  46538840 atctttgcaaatgcactatacttcaaaggagtatggttacaggaggttgatacttcaaaaacaaaagactatgattttaaccttcttaatggcagctcag 46538939  T
Q  319 taaaggttccctttatgac 337  Q
    | ||||||||||| |||||    
T  46538940 tcaaggttcccttcatgac 46538958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 46490549 - 46490689
Alignment:
Q  204 agcttaacgagtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgacc-gtttgatacttcaaaaacgaaggactatgattttgacctt 302  Q
    |||||||| || |||||| |||| ||||||||||| ||||||||||| ||| || ||   ||||||| ||||||||||||| |||||||||||| |||||    
T  46490549 agcttaaccaggctaatcattgctaatgcactatacttcaaaggagtgtgg-aatgataagtttgatgcttcaaaaacgaaagactatgattttcacctt 46490647  T
Q  303 ctcaatggcaactcagtaaaggttccctttatgaccagcaag 344  Q
     | ||||||| |||| | ||||||||||| ||||| ||||||    
T  46490648 ttgaatggcagctcaattaaggttcccttcatgactagcaag 46490689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 46483960 - 46484029
Alignment:
Q  276 aaaacgaaggactatgattttgaccttctcaatggcaactcagtaaaggttccctttatgaccagcaaga 345  Q
    ||||| || |||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  46483960 aaaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaaga 46484029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 46473830 - 46473910
Alignment:
Q  265 ttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcagtaaaggttccctttatgaccagcaaga 345  Q
    ||||| |||||| ||| || |||||||||||| ||||||||||||||| |||||| |||||| |||||||||| |||||||    
T  46473830 ttgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagttaaggtttcctttatgactagcaaga 46473910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 341
Target Start/End: Original strand, 5160008 - 5160251
Alignment:
Q  97 ttgatactgatttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggctt 196  Q
    |||||| || ||||||||||  ||||||||   ||||||||||||||||||||||||| |||||||| || ||||||||| | |||||||  |   | |     
T  5160008 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctctaagatc 5160107  T
Q  197 agttcacagcttaacgagtctaatctttgcaaatgcactatatttcaaaggagtttggcaacgacc-gtttgatacttcaaaaacgaaggactatgattt 295  Q
    |||| | || ||||| || || |||||||| |||||||| || || |||||||  ||| |  ||   |||||||  ||| |||||||| |||||||||||    
T  5160108 agttgataggttaaccagactcatctttgctaatgcactctactttaaaggagcatgg-agtgataagtttgatgtttcgaaaacgaaagactatgattt 5160206  T
Q  296 tgaccttctcaatggcaactcagtaaaggttccctttatgaccagc 341  Q
    | ||||| | ||||| | |||||| ||||||||||| |||||||||    
T  5160207 tcaccttttgaatgg-agctcagtcaaggttcccttcatgaccagc 5160251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 341
Target Start/End: Original strand, 5155992 - 5156222
Alignment:
Q  111 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaa 210  Q
    ||||||| ||||||||   |||||| |||||||||||||||||| |||||||| || ||||||||| | |||||||  ||  | | |||| | |||||||    
T  5155992 aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaa 5156091  T
Q  211 cgagtctaatctttgcaaatgcactatatttcaaaggagtttggcaacga-ccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatg 309  Q
    |  | || |||||||| |||||||| || || |||||||  ||| |  ||   |||||||  ||  |||||||| |||||||||||| ||||| | ||||    
T  5156092 cccgcctcatctttgctaatgcactctactttaaaggagcatgg-agtgagaagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatg 5156190  T
Q  310 gcaactcagtaaaggttccctttatgaccagc 341  Q
    ||| ||| || ||||||||||| |||||||||    
T  5156191 gcagctcggtcaaggttcccttcatgaccagc 5156222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 46554454 - 46554334
Alignment:
Q  222 tttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcagtaa 321  Q
    ||||| |||||||||||||| ||||| |  ||||| | |||||||||  ||||| |||| || |||||||||||| |||||||  |||| | |||| | |    
T  46554454 tttgctaatgcactatattttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttcttgatggtagctcattca 46554355  T
Q  322 aggttccctttatgaccagca 342  Q
    |||||||||| | ||||||||    
T  46554354 aggttcccttcaagaccagca 46554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 46531777 - 46531900
Alignment:
Q  222 tttgcaaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcagtaa 321  Q
    ||||| |||||||| || || || ||||  ||||| | ||| |||||| |||||||||| || ||| |||||||| ||||||||  ||||| |||| | |    
T  46531777 tttgctaatgcactctactttaatggagcatggcatcaaccatttgatgcttcaaaaacaaaagaccatgattttcaccttctcggtggcagctcaatta 46531876  T
Q  322 aggttccctttatgaccagcaaga 345  Q
    |||||||||| ||||| |||||||    
T  46531877 aggttcccttcatgactagcaaga 46531900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 46549346 - 46549299
Alignment:
Q  130 aagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaa 177  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||    
T  46549346 aagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaaa 46549299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 46526784 - 46526740
Alignment:
Q  130 aagaagtgaatttatgggctgaaaaggagacaaaagggcttatta 174  Q
    ||||||||||||||||||||||||| |||||||| || |||||||    
T  46526784 aagaagtgaatttatgggctgaaaaagagacaaatggccttatta 46526740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 46479537 - 46479612
Alignment:
Q  111 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 186  Q
    ||||||| ||||||||   | |||||||||| |||||||||||| |||||||| || ||||||||| | |||||||    
T  46479537 aaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaagaacttcttc 46479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 46479645 - 46479771
Alignment:
Q  219 atctttgcaaatgcactatatttcaaaggagtttggcaacgacc-gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactca 317  Q
    |||||||| ||||||||||| ||||||||||  ||| || ||   ||||||| ||||||||||| | ||||| || ||| ||||| | ||||| | | ||    
T  46479645 atctttgccaatgcactatacttcaaaggagcgtgg-aatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagccca 46479743  T
Q  318 gtaaaggttccctttatgaccagcaaga 345  Q
    || ||||||||||| |||||||||||||    
T  46479744 gtcaaggttcccttcatgaccagcaaga 46479771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 46497692 - 46497767
Alignment:
Q  111 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 186  Q
    ||||||| ||||||||   | ||||||||||||||||||||||  |||||||| || ||||||||| | |||||||    
T  46497692 aaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttattaaagaacttcttc 46497767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 51943814 - 51943869
Alignment:
Q  288 tatgattttgaccttctcaatggcaactcagtaaaggttccctttatgaccagcaa 343  Q
    ||||||||| ||||||| ||||| | |||||| ||||||||||| |||||||||||    
T  51943814 tatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaa 51943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 4614198 - 4614128
Alignment:
Q  130 aagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagtt 200  Q
    ||||||||||||||||||||||||| |||||||| ||  | || |||||||| |||| ||| |||| ||||    
T  4614198 aagaagtgaatttatgggctgaaaaagagacaaacggtttaataaaaaatctacttccacccggctcagtt 4614128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 45902723 - 45902765
Alignment:
Q  133 aagtgaatttatgggctgaaaaggagacaaaagggcttattaa 175  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  45902723 aagtgaatttatgggctgaaaaagagacaaatggccttattaa 45902765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 46549188 - 46549134
Alignment:
Q  288 tatgattttgaccttctcaatggcaactcagtaaaggttccctttatgaccagca 342  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||| || |||||||    
T  46549188 tatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagca 46549134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 4581781 - 4581748
Alignment:
Q  130 aagaagtgaatttatgggctgaaaaggagacaaa 163  Q
    ||||||||||||||||||||||||| ||||||||    
T  4581781 aagaagtgaatttatgggctgaaaaagagacaaa 4581748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 45884089 - 45884048
Alignment:
Q  135 gtgaatttatgggctgaaaaggagacaaaagggcttattaaa 176  Q
    |||||||||||||||||||| |||||||| || |||||||||    
T  45884089 gtgaatttatgggctgaaaaagagacaaatggtcttattaaa 45884048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 343
Target Start/End: Original strand, 15555780 - 15555991
Alignment:
Q  132 gaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacgagtctaatctttgcaaatg 231  Q
    ||||| |||| ||||| ||||||||||||||| || |||||||||    || ||||||| || |  ||  |||||||||| || || |||||||||||||    
T  15555780 gaagtcaattcatgggttgaaaaggagacaaatggccttattaaaggagttattcaaccagggtcggtcaacagcttaaccagactcatctttgcaaatg 15555879  T
Q  232 cactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaactcagtaaaggttccctt 331  Q
    |||| || || |||||| | ||| | |    ||||||| |||| |||||||| |||||||||||| ||||||||||||| | |||| | |||||||| ||    
T  15555880 cactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcaccttctcaatggtagctcactcaaggttccgtt 15555979  T
Q  332 tatgaccagcaa 343  Q
    ||||| ||||||    
T  15555980 tatgagcagcaa 15555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 35155161 - 35155232
Alignment:
Q  107 tttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaa 178  Q
    ||||||||||  ||||||||   |||||||||||||||||||| |||| |||||||| || |||||||||||    
T  35155161 tttgaaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaaaa 35155232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 35155342 - 35155396
Alignment:
Q  288 tatgattttgaccttctcaatggcaactcagtaaaggttccctttatgaccagca 342  Q
    ||||||||| ||||||| ||||||| |||||| ||||||||||| ||||||||||    
T  35155342 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagca 35155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 35162205 - 35162261
Alignment:
Q  130 aagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 186  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||| | |||||||    
T  35162205 aagaagtgaatttatgggctgaaaaagaaacaaatggccttattaaagaacttcttc 35162261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 20358872 - 20358951
Alignment:
Q  107 tttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 186  Q
    |||||||| || |||||||| | || |||||||||||||| ||||||| |||||||  || ||||||||| | |||||||    
T  20358872 tttgaaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttc 20358951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 9675899 - 9675849
Alignment:
Q  286 actatgattttgaccttctcaatggcaactcagtaaaggttccctttatga 336  Q
    ||||||||||| ||||||| ||||||| |||||| || |||||||||||||    
T  9675899 actatgattttcaccttctgaatggcagctcagtcaaagttccctttatga 9675849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 21464551 - 21464429
Alignment:
Q  128 agaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggcttagttcacagcttaacgagtctaatctttgca 227  Q
    ||||||||  ||||||||||||||||| |||||||| || | ||| |||||||| |||| |||||  | | || | || ||||| |  || || ||||||    
T  21464551 agaagaagcaaatttatgggctgaaaaagagacaaatggtcatatcaaaaatctacttccacctgagtcatttaatagtttaaccaaccttatatttgca 21464452  T
Q  228 aatgcactatatttcaaaggagt 250  Q
    ||||||||||| || ||||||||    
T  21464451 aatgcactatactttaaaggagt 21464429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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