View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_low_11 (Length: 251)
Name: NF5077_low_11
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 30629733 - 30629487
Alignment:
| Q |
5 |
ggtagattattctcttccaactagattttcttcaaatacaagagtcacaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
104 |
Q |
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| T |
30629733 |
ggtaaattcttctcttccaattagattttcttcaaatacaagagtcgtaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
30629634 |
T |
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| Q |
105 |
gtctcaaaccaatcacaaattggtccctaatctacattataaccatagcataaaattaaaatgtttaatttacaacacaaaatcggaagaaagcataaac |
204 |
Q |
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| T |
30629633 |
atctcaaaccaatcacaagttggtccctaatctacattataaccatatcataaaattaaaatgtttaatatacaacacaaaatcggaagaaagcataaac |
30629534 |
T |
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| Q |
205 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttatt |
251 |
Q |
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| T |
30629533 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttatt |
30629487 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 34329631 - 34329597
Alignment:
| Q |
48 |
gtcacaaatcaaacttctgaccacttgtttaaagt |
82 |
Q |
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| T |
34329631 |
gtcacaaatcaaacatctgaccacttgtttaaagt |
34329597 |
T |
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