View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_low_12 (Length: 248)
Name: NF5077_low_12
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10421143 - 10420898
Alignment:
| Q |
1 |
tgatgatattcagaatgtaagcacagaccagtcttcaactccaatggtcccaacatcataatgacataccggaacttata------------aagtttca |
88 |
Q |
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| T |
10421143 |
tgatgatattcagaatataagcacagaccagtcttcaactccaatggtcccaacatcataatgacataccggaacttatacatttgtaatgaaagtttca |
10421044 |
T |
|
| Q |
89 |
attcaaaagttaaagttattatgcagatttttctagatgtctcagttcaaccacttgaactacaccatgagaactaacgtaacctttttgggtacatata |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
10421043 |
attcaaaagttaaagttattatgcagatttttctagatgtctcagttcaaccacttgaactacgccatgagaactaacgtaaccttttttggtacatata |
10420944 |
T |
|
| Q |
189 |
atatatacatttgtagcatttccagctaggtgttcgtgtgggtttt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10420943 |
atatatacatttgtagcatttccagctaggtgttcgtgtgggtttt |
10420898 |
T |
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