View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_low_3 (Length: 497)
Name: NF5077_low_3
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 106 - 479
Target Start/End: Complemental strand, 34091952 - 34091581
Alignment:
| Q |
106 |
gggggacgaattccccttaaaatattgattgatgtgaagtaaagtggggtatcattgtgggttataaataatatatatttgggcttatattactgtacta |
205 |
Q |
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| T |
34091952 |
gggggacgaattccccttaaaatattgattgatgtgaagtaaagtggtgtatcattgtgggttataaataatacatatttgggcttatattactgtacta |
34091853 |
T |
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| Q |
206 |
atgtgaaaaattagtacattaattttccnnnnnnnntactagtatatataagttcacaattaatattgcagaagatatatagcattattcaagcatgaca |
305 |
Q |
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| T |
34091852 |
atgtgaaaaattagtacattaattttccaaaaaaattactagtatata--agttcacaattaatattgcagaagatatatagcattattcaagcatgaca |
34091755 |
T |
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| Q |
306 |
aaaaagtttcatttttcttcatgattcacaaacaaacaagatgtctccatataaaactacccttcttttgtttaccccccaatagttagtaggtgtagct |
405 |
Q |
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| T |
34091754 |
aaaaagtttcatttttcttcatgattcacaaacaaacaagatgtctacatataaaattacccttcttttgtttaccccccaatagttagtaggtgtagct |
34091655 |
T |
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| Q |
406 |
cagtagctgggacctagtctcaagaaaatgatgtcaagaaactggaaagtgtgtacagtttcatatatatccat |
479 |
Q |
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| T |
34091654 |
cagtagctgggacctagtctcaagaaaatgatgtcaagaaactggaaagtgtgtacagtttcatatatatccat |
34091581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34091981 - 34092097
Alignment:
| Q |
1 |
tttatttttgcatgatgattaggttaccataatggttaactttaatgatagaacttttaagtgcttaaagggtaaagtggttttgacatcagagaggtat |
100 |
Q |
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| T |
34091981 |
tttattttggcatgatgattaggttaccataatggttaactttaatgatagaacttttaagtgcttaaagggtaaagtggttttgacatcagagaggtat |
34092080 |
T |
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| Q |
101 |
tagttgggggacgaatt |
117 |
Q |
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| T |
34092081 |
tagttgggggaagaatt |
34092097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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