View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_low_4 (Length: 449)
Name: NF5077_low_4
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 3775587 - 3775343
Alignment:
| Q |
18 |
atcacaaggtataacctaataatttaagtannnnnnnn-agtcgagtcaagacttatgataaataacataaacatgtttaaatcttagtatgataaatac |
116 |
Q |
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| T |
3775587 |
atcacaaggtataacctaataatttaagtattgttttttagtcgagtcaagacttatgataatt----taaacatctt-aaatcttagtatgataaatac |
3775493 |
T |
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| Q |
117 |
agtcaaataagaaaaagtctttaaagatgttaaaaaa---tgtttttgtagtcaaaacaagataagaatggaactccattgcaaataaaattgtaaattt |
213 |
Q |
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| T |
3775492 |
agtcaaataagaaaaagtctttaaagatgtaaaaaaaatatgtttttgtagtcaaaacaagataagaatggaactccattgcaaagaaaattttaaattt |
3775393 |
T |
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| Q |
214 |
aaaaatgaattcttcactgctgtcgatcggtcatcggtgcatgtatctta |
263 |
Q |
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| T |
3775392 |
aaaaatgaattcttcactgttgtcgatcggtcatcggtgcatgtatctta |
3775343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 3775320 - 3775281
Alignment:
| Q |
320 |
taataagggtgactcaaagtcactatagtattcttaaata |
359 |
Q |
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| T |
3775320 |
taataagggtgactcaaagtcactatagtattcttaaata |
3775281 |
T |
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