View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5077_low_6 (Length: 394)
Name: NF5077_low_6
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5077_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 7332920 - 7332650
Alignment:
| Q |
1 |
tacggcgatgacggcggaagagacggcggagtcagcgatctcagtagtcccagaggaattgttgattgaaatcctttatagaattgataatactctgcaa |
100 |
Q |
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| T |
7332920 |
tacggcgatgacggcggaagagacggcggagtcaccgatctcagtagtcccagaggaattgttgattgaaatcttttatagaattgataatactctgcaa |
7332821 |
T |
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| Q |
101 |
ttgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgctgggaagcttttagagattcacggacattcccttcctatatgcaaag |
200 |
Q |
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| T |
7332820 |
ttgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgctgggaagcttttagagattcacggatattccctttctatatgcaaag |
7332721 |
T |
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| Q |
201 |
gtggtctgggaacagtacaatgctttcaaattgcagaatattatgcctcaagaagaagaagaagatgaaga |
271 |
Q |
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| T |
7332720 |
gtggtctgggaacagtacaatgctttcaaattgcagaatattatgcctcaagaagaagaagaagatgaaga |
7332650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 7323316 - 7323252
Alignment:
| Q |
89 |
aatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattcgc |
153 |
Q |
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| T |
7323316 |
aatactctgcaattgaggtgcgtttgcaacttgtggaattcgctagttcttgatcctcaattcgc |
7323252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 7370944 - 7370907
Alignment:
| Q |
89 |
aatactctgcaattgaggtgcgtttgcaagttgtggaa |
126 |
Q |
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| T |
7370944 |
aatactctgcaattgaggtgtgtttgcaagttgtggaa |
7370907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 7375743 - 7375694
Alignment:
| Q |
94 |
tctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatc |
143 |
Q |
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| T |
7375743 |
tctgcaattgagatgcgtttgcaagttgtggaattcgctggttgttgatc |
7375694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 7908071 - 7908120
Alignment:
| Q |
94 |
tctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatc |
143 |
Q |
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| T |
7908071 |
tctgcaattgaggtgcgtatgcaagtggtggaaatcacttgttcttgatc |
7908120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 6828642 - 6828729
Alignment:
| Q |
48 |
tcccagaggaattgttgattgaaatcctttatag-----aattgataa-tactctgcaattgaggtgcgtttgcaagttgtggaaatc |
129 |
Q |
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| T |
6828642 |
tcccggaggaagtgatgattgaaatcctttatagggttgaattgaacagtactctgcaattgaggtgtgtttgcaaattgtggaaatc |
6828729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 7342307 - 7342220
Alignment:
| Q |
48 |
tcccagaggaattgttgattgaaatcctttatagaattgat--aa----tactctgcaattgaggtgcgtttgcaagttgtggaaatc |
129 |
Q |
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| T |
7342307 |
tcccagaggaattgatgattgaaatcctttctagggttgagtcaagcgttactctgcaactgaggtgcgtttccaagttgtggaaatc |
7342220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 43383943 - 43383857
Alignment:
| Q |
296 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttg------tgggttccactttttcccaatgacacctcttatg |
376 |
Q |
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|
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| T |
43383943 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttggtgttttgggttccactttttcccaatgacacctcttatg |
43383857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 25870613 - 25870539
Alignment:
| Q |
296 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttgtgggttccactttttcccaatgacacctcttatg |
376 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||| |
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| T |
25870613 |
tggaaaagggaaattcaaatcaaatggtagtgttg------gtgtcgtgggttcccctttatcccaatgacacctcttatg |
25870539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 30411909 - 30411864
Alignment:
| Q |
101 |
ttgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatg |
146 |
Q |
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||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
30411909 |
ttgaggtgcatttgtaagttgtggaaatcactagttgttgatcatg |
30411864 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 13246250 - 13246188
Alignment:
| Q |
89 |
aatactctgcaattgaggtgcgtttgcaagttgtggaaatcactcgttgttgatcatgaattc |
151 |
Q |
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|||||||| ||||| |||||||||||||||| | |||||| || |||||||||| ||||||| |
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| T |
13246250 |
aatactctccaattaaggtgcgtttgcaagtcatagaaatcgctggttgttgatcctgaattc |
13246188 |
T |
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