View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5077_low_8 (Length: 299)

Name: NF5077_low_8
Description: NF5077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5077_low_8
NF5077_low_8
[»] chr7 (6 HSPs)
chr7 (135-284)||(7141340-7141489)
chr7 (1-136)||(7142483-7142620)
chr7 (5-123)||(10670085-10670205)
chr7 (5-68)||(9405403-9405466)
chr7 (18-96)||(3400295-3400375)
chr7 (5-98)||(9070895-9070990)
[»] chr5 (2 HSPs)
chr5 (5-123)||(26329603-26329723)
chr5 (5-98)||(25681066-25681161)
[»] chr4 (4 HSPs)
chr4 (1-131)||(47024295-47024427)
chr4 (5-118)||(10451027-10451145)
chr4 (1-105)||(17024471-17024577)
chr4 (24-118)||(10319794-10319890)
[»] scaffold0650 (1 HSPs)
scaffold0650 (5-118)||(5283-5398)
[»] chr3 (3 HSPs)
chr3 (5-117)||(13911745-13911859)
chr3 (5-89)||(33578234-33578320)
chr3 (5-98)||(19218745-19218839)
[»] chr1 (3 HSPs)
chr1 (7-123)||(26657936-26658054)
chr1 (9-91)||(23519287-23519370)
chr1 (36-98)||(34533099-34533163)
[»] chr8 (2 HSPs)
chr8 (3-68)||(11309838-11309903)
chr8 (1-70)||(32239765-32239834)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 7141489 - 7141340
Alignment:
Q  135 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagaagcaacaaaaccttcacaaccttgaggagacttgaaatgag 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7141489 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagtagcaacaaaaccttcacaaccttgaggagacgtgaaatgag 7141390  T
Q  235 agcaatgtctcctcactatctaccacgcctagatgtcatacgagtataat 284  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||    
T  7141389 agcaatgtctccccattacctaccacgcctagatgtcatacgagtataat 7141340  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 7142620 - 7142483
Alignment:
Q  1 atcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  7142620 atcttgccttgaagctctaatgtttgacctttgtcttgaaccgtcagtgttctaaatgaataataatgagtgcaagagtctctatttatagcaaatgatt 7142521  T
Q  99 gggtaggatgtaggagaagagaactagtcttttgcact 136  Q
     |||||||||||||||||||||||||||||||||||||    
T  7142520 aggtaggatgtaggagaagagaactagtcttttgcact 7142483  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 10670085 - 10670205
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggt 102  Q
    ||||||||||| || |||||||||| |||  ||||||| | | |||| | |||||| |||||||  |||| | |||||||||||||| ||||||||||||    
T  10670085 tgccttgaagccctgatgtttgacccttgctttgaaccatcaatgttttgaatgaaaaataatgagtgcaagggtctctatttatagaaaatgattgggt 10670184  T
Q  103 aggatgtaggagaagagaact 123  Q
    ||| | |||||||||| ||||    
T  10670185 agggtttaggagaagataact 10670205  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 9405403 - 9405466
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 68  Q
    |||||||||||||| | |||||||| |||||||||||||||| |||||| |||||| |||||||    
T  9405403 tgccttgaagctctgacgtttgacccttgtcttgaaccgttattgttctgaatgaaaaataatg 9405466  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 3400375 - 3400295
Alignment:
Q  18 taatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatga 96  Q
    ||||| |||||| | | |||||||||||||  |||||||||||||| |||  ||||| |||||||||||||||||| ||||    
T  3400375 taatgcttgaccctcgccttgaaccgttagatttctaaatgaataagaatgcgtgcaagagtctctatttatagcatatga 3400295  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 9070990 - 9070895
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgatt 98  Q
    |||||||||||||| ||| ||||| |||  ||||||||||  ||||| | |||||||||||||  ||||| | |||||||||||||| ||| ||||    
T  9070990 tgccttgaagctctgatgcttgacattttccttgaaccgtcggtgttttgaatgaataataataagtgcaagggtctctatttatagaaaaggatt 9070895  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 26329603 - 26329723
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgattgggt 102  Q
    |||||||||||||||||| |||||| ||| |||||||| ||||||||||| ||| | ||||||  ||||| | |  ||||||||||||||| ||||||||    
T  26329603 tgccttgaagctctaatgcttgacccttgccttgaaccattagtgttctatatggaaaataatgagtgcaagggcatctatttatagcaaacgattgggt 26329702  T
Q  103 aggatgtaggagaagagaact 123  Q
    ||| | |||||||||| ||||    
T  26329703 agggtttaggagaagaaaact 26329723  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 25681161 - 25681066
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 98  Q
    ||||||||| | |||||| |||||| ||| ||||||||  |||  |||| ||| | ||||||||||  || | |||||||||||||||||||||||    
T  25681161 tgccttgaaaccctaatgcttgacccttgccttgaaccactagctttctgaataattaataatgtgtgcaagtgtctctatttatagcaaatgatt 25681066  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 47024295 - 47024427
Alignment:
Q  1 atcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgatt 98  Q
    |||||||||||| ||| | ||| |||||| |||||||||||||| | ||||||||||||||||||||  ||||| | |||||||||||||| |||| |||    
T  47024295 atcttgccttgaggctttgatgcttgacccttgtcttgaaccgtcaatgttctaaatgaataataattagtgcaagggtctctatttatagaaaataatt 47024394  T
Q  99 gggtaggatgtaggagaagagaactagtctttt 131  Q
       |||| |||||||||||| | |||| |||||    
T  47024395 aattagggtgtaggagaagaaatctagactttt 47024427  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 10451027 - 10451145
Alignment:
Q  5 tgccttgaagctctaatgtttgacc-tttgtcttgaaccgtta-gtgtt-ctaaatgaataataatgtg--cacgagtctctatttatagcaaatgattg 99  Q
    |||||||||||||| |||||||||| |||| ||  |||||| | ||||| || |||||||||||||| |  || ||||||| |||||||| |||||||||    
T  10451027 tgccttgaagctctgatgtttgaccctttgcctccaaccgtcaagtgtttctgaatgaataataatgagagcaagagtctcaatttatagaaaatgattg 10451126  T
Q  100 ggtaggatgtaggagaaga 118  Q
    |||||| | ||||||||||    
T  10451127 ggtagggtttaggagaaga 10451145  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17024471 - 17024577
Alignment:
Q  1 atcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgatt 98  Q
    ||||||||||| |||||  ||| |||||| ||| |||||||||| | |||||| |||||||||||||  ||| | | ||||||||||||||  |||||||    
T  17024471 atcttgccttggagctccgatgcttgacccttgccttgaaccgtcaatgttctgaatgaataataatgagtgtaagggtctctatttatagtgaatgatt 17024570  T
Q  99 gggtagg 105  Q
     ||||||    
T  17024571 aggtagg 17024577  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 10319794 - 10319890
Alignment:
Q  24 ttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggtaggatgtaggagaaga 118  Q
    |||||| ||| ||| |||||||||||||||  ||||| |||||||  | ||   ||||||||||||||||||||||| |||||| | ||||||||||    
T  10319794 ttgacccttgccttcaaccgttagtgttctggatgaaaaataatgaattcaaatgtctctatttatagcaaatgattaggtagggtttaggagaaga 10319890  T

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Target: scaffold0650 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 5283 - 5398
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatgattgggt 102  Q
    |||||||||||||| ||| |||||| ||| |||||||||| |||||||| |||||||||||||  ||||| | ||||||||||||||  ||| | | |||    
T  5283 tgccttgaagctctgatgcttgacccttgccttgaaccgtcagtgttcttaatgaataataatgagtgcaagggtctctatttatagataataactaggt 5382  T
Q  103 aggatgtaggagaaga 118  Q
    ||| | ||||||||||    
T  5383 aggttttaggagaaga 5398  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 13911859 - 13911745
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggt 102  Q
    |||||||||||| | ||  |||||| ||| ||||||| || ||||| || ||| ||||||||||  |||| | |||||||||||||| ||||||||||||    
T  13911859 tgccttgaagctatgatacttgacccttgccttgaactgtcagtgtcctcaatcaataataatgagtgcaagggtctctatttatagaaaatgattgggt 13911760  T
Q  103 aggatgtaggagaag 117  Q
    ||||| | |||||||    
T  13911759 aggattttggagaag 13911745  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 33578320 - 33578234
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataata--atgtgcacgagtctctatttatag 89  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||  |||||||||||||| |   |||||| | ||||||||||||||    
T  33578320 tgccttgaagctctaatgtttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatag 33578234  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 19218745 - 19218839
Alignment:
Q  5 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 98  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||  || | ||||||||| ||||||  || | |||||||||||||| | ||||||    
T  19218745 tgccttgaa-ctctgatgcttgacccttgtcttgaaccgttagctttattaatgaataagaatgtgtacaagggtctctatttatagaatatgatt 19218839  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 26658054 - 26657936
Alignment:
Q  7 ccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggtag 104  Q
    |||||||||||| ||| |||||| ||| ||||||| |  |||||||| ||| || |||||||  |||  | || |||||||||| |||||||||||||||    
T  26658054 ccttgaagctctgatgcttgacccttgccttgaactgccagtgttctgaataaaaaataatgagtgctagggtatctatttataacaaatgattgggtag 26657955  T
Q  105 gatgtaggagaagagaact 123  Q
    | | |||||||||| ||||    
T  26657954 ggtttaggagaagaaaact 26657936  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 23519287 - 23519370
Alignment:
Q  9 ttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataa--tgtgcacgagtctctatttatagca 91  Q
    ||||||||||||||||||||| ||| || | ||||| | |||||||||||||  ||||  |||||| | ||||||||||||||||    
T  23519287 ttgaagctctaatgtttgacccttgcctag-accgtcaatgttctaaatgaactataatgtgtgcaagggtctctatttatagca 23519370  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 34533163 - 34533099
Alignment:
Q  36 ttgaaccgttagtgttctaaatgaataataa--tgtgcacgagtctctatttatagcaaatgatt 98  Q
    |||||| |||||| |||||||||||||| ||  |||||| ||||||||||||||| || ||||||    
T  34533163 ttgaactgttagttttctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgatt 34533099  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 11309838 - 11309903
Alignment:
Q  3 cttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 68  Q
    |||| ||||||||||| |||||||||| ||||||||| |    |||||||| ||||||||||||||    
T  11309838 cttgtcttgaagctctgatgtttgaccattgtcttgatcttccagtgttctgaatgaataataatg 11309903  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32239834 - 32239765
Alignment:
Q  1 atcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 70  Q
    ||||||||||  | |||||||||||||||||||  |||||||| |||  |||| ||| ||||||||||||    
T  32239834 atcttgcctttgaactctaatgtttgacctttgcattgaaccgctagctttctgaataaataataatgtg 32239765  T

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