View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5078-Insertion-4 (Length: 863)
Name: NF5078-Insertion-4
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 701; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 863
Target Start/End: Original strand, 52589826 - 52590679
Alignment:
| Q |
8 |
atggcatgtcgtgaatttaattaagagtgtagattcaaatcgtacttggcactaccttttatttacacacaaaatttcttattcaacatcaatgcattgc |
107 |
Q |
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| T |
52589826 |
atggcatgtcgtgaatttaattaagagtgtagattcaaatcgtacttggcactaccttttatttacacacaaaatttcttattcaacatcaatgcattgc |
52589925 |
T |
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| Q |
108 |
aaaaaattgcctgcggataaaatagaaccaatcatctgtaatattattattacaataagtaaatgaatatatctaacacatatatatacctatctgtata |
207 |
Q |
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| T |
52589926 |
aaaaaattgcctgcagataaaatagaaccaatcatctgtaatattattattacaataagtaaatgaatatatctaacacatatatatacctatctgtata |
52590025 |
T |
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| Q |
208 |
ttttgtacgtttgtgaattacatcacttttatgaacaatgagggcaacgcgaatgaatgaatggaattaaaaaacaacagcatatggtttgaggaagtac |
307 |
Q |
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| T |
52590026 |
ttttgtacgtttgtgaattacatcacttttatgaacaatgagggcaacgcgaatgaatgaatg-aattaaaaaacaacagcatatggtttgaggaagtac |
52590124 |
T |
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| Q |
308 |
acctttcagagataagatacctttagtnnnnnnnnnnnnnntatctttggtagattttcatacgacaaattcatgcaacagatgagtattgccaaacatg |
407 |
Q |
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| T |
52590125 |
acctttcagagataagatacctttagtaaaaaatgaaaaa-tatctttggtagattttcatacgacaaattcatgcaacagatgagtattgccaaacatg |
52590223 |
T |
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| Q |
408 |
tgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgnnnnnnnnnnnnnnnnngtcttttat |
507 |
Q |
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| T |
52590224 |
tgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgattattattattattatgtcttttat |
52590323 |
T |
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| Q |
508 |
gaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgt |
607 |
Q |
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| T |
52590324 |
gaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgt |
52590423 |
T |
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| Q |
608 |
aaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaatttt |
707 |
Q |
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| T |
52590424 |
aaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaatttt |
52590523 |
T |
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| Q |
708 |
ccatttccacaatctatcacannnnnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaataatctgtacattgtctcgtg |
807 |
Q |
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| T |
52590524 |
ccatttccacaatctatcacatttttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaataatttgtacattgtcttgtg |
52590623 |
T |
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| Q |
808 |
actcttcttccaatttataattaccttggagtgtatttccagatgaaaaattgcag |
863 |
Q |
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| T |
52590624 |
actcttcttccaatttattattaccttggagtgtatttccagatgaaaaattgcag |
52590679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 7301066 - 7301149
Alignment:
| Q |
372 |
acaaattcatgcaacagatgagtattgccaaacatgtgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagta |
455 |
Q |
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| T |
7301066 |
acaaactcatgtaacaaatgagggttggcaaacttgtgttgttgctttccagtgtctgtgaagtgatagtctaacaaatcagta |
7301149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 579
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
534 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
579 |
Q |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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