View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5078-Insertion-5 (Length: 597)
Name: NF5078-Insertion-5
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 597
Target Start/End: Original strand, 27843614 - 27844225
Alignment:
| Q |
8 |
gttttctcgtaagtacaccttgtgctaggagggtcaattgtgtggtatataattcattttaacttcttnnnnnnnnnnnntaactccaacattcatagct |
107 |
Q |
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| T |
27843614 |
gtttcctcctaagtacaccttgtactaggagggccaattgtgtggtatataattcattttagcttcttaaaaaaaataataaagtccaacattcatagct |
27843713 |
T |
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| Q |
108 |
ttgaactatgatatttcaccataaataatatatataaatattacacgtgaagatgaaccatttcaagaaatattgtaattttccatatatttatcgtaaa |
207 |
Q |
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| T |
27843714 |
ttgaactatgatatttcaccataaataatatatataaatattacacttgaagaagaaccatttcaagaaatattgtaattttccatatatttatcgtaaa |
27843813 |
T |
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| Q |
208 |
atttgatgacaattatttttaagaaagggggagttgttacacctatattttccatatattataattttcacacaataattttcttataagtcaatagata |
307 |
Q |
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| T |
27843814 |
atttgacgacaattatttttaagaaagggggagttgttacacctatattttccatatattataattttcacacaataattttcttataagtcaatagata |
27843913 |
T |
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| Q |
308 |
ttttctttggtggaatacaagttagtgactcaatacatgttatattcctctcgtgagagattcgcgtggattcaatcccgataagtagcatttccaatat |
407 |
Q |
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| T |
27843914 |
ttttctttggtggaatacaagttagtgactcaatacatgttatattcctctcgtgagagattcgcgtggattcaatcccgataagtagcatttccgatat |
27844013 |
T |
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| Q |
408 |
aataagaaataagcgagtac----------------------tagtccttgtctctttgtcacattcttttctttgatttgaaaaactaactgctacata |
485 |
Q |
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| T |
27844014 |
aataagaaataagcgagtactactaatactatgctttagcagtagtccttgtctctttgtcacattcttttctttgatttgaaaaactaactgctacata |
27844113 |
T |
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| Q |
486 |
tttgatatttctagttctagcacttagaaaaacacaaacctaattacgttttagcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgag |
585 |
Q |
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| T |
27844114 |
tttgatatttctagttctagcacttagaaaaacacaaacctaattacgtgttagcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgag |
27844213 |
T |
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| Q |
586 |
cccgttttcggc |
597 |
Q |
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| T |
27844214 |
cccgttttcggc |
27844225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23997320 - 23997378
Alignment:
| Q |
17 |
taagtacaccttgtgctaggagggtcaattgtgtggtatataattcattttaacttctt |
75 |
Q |
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| T |
23997320 |
taagtacatcttgtgctaggagggcgaattgtgtggtatataattcattttaacttctt |
23997378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 27938865 - 27938931
Alignment:
| Q |
8 |
gttttctcgtaagtacaccttgtgctaggagggtcaattgtgtggtatataattcattttaacttctt |
75 |
Q |
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|||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27938865 |
gtttcctcctaaatacaccttgtgctaggaggc-caattgtgtggtatataattcattttaacttctt |
27938931 |
T |
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