View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5078-Insertion-6 (Length: 602)

Name: NF5078-Insertion-6
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5078-Insertion-6
NF5078-Insertion-6
[»] chr1 (8 HSPs)
chr1 (56-525)||(19235845-19236327)
chr1 (149-252)||(15947763-15947867)
chr1 (149-252)||(28292550-28292654)
chr1 (561-598)||(19235807-19235844)
chr1 (174-252)||(15183562-15183641)
chr1 (149-252)||(15939399-15939506)
chr1 (33-98)||(24754884-24754949)
chr1 (212-257)||(49703804-49703849)
[»] chr4 (7 HSPs)
chr4 (33-249)||(35293019-35293235)
chr4 (33-117)||(24195026-24195110)
chr4 (33-99)||(28201582-28201648)
chr4 (80-121)||(3161461-3161502)
chr4 (211-252)||(47312417-47312458)
chr4 (33-98)||(48546862-48546926)
chr4 (202-254)||(24194729-24194781)
[»] chr3 (3 HSPs)
chr3 (33-121)||(33282823-33282911)
chr3 (33-121)||(22223705-22223791)
chr3 (33-121)||(8795619-8795707)
[»] chr5 (1 HSPs)
chr5 (33-121)||(32424275-32424362)
[»] chr8 (5 HSPs)
chr8 (205-251)||(18142749-18142795)
chr8 (144-255)||(9555251-9555364)
chr8 (144-249)||(35171058-35171163)
chr8 (36-121)||(4606150-4606235)
chr8 (33-98)||(37294981-37295046)
[»] chr2 (6 HSPs)
chr2 (144-252)||(1130551-1130659)
chr2 (216-252)||(43080781-43080817)
chr2 (220-253)||(9158496-9158529)
chr2 (33-121)||(83717-83805)
chr2 (205-249)||(21436836-21436880)
chr2 (224-256)||(33013101-33013133)
[»] chr7 (2 HSPs)
chr7 (33-121)||(3839195-3839283)
chr7 (80-121)||(30154252-30154293)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 56 - 525
Target Start/End: Complemental strand, 19236327 - 19235845
Alignment:
Q  56 gaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaaggtaaacacctttttagctgccgagtctgatgaa 155  Q
    |||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  19236327 gaacgacacacttatgaagcgtagttttgagagcggtgaatttagacggaccaacttaacattaaacgtaaacacctatttagctgccgagtctgatgaa 19236228  T
Q  156 aataggatcacggtgctgatattttctgacttaaggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagttaaaggatcg 255  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19236227 aataggatcacggtgcagatattttcagacttaaggatcgatttgtaaccaaaagaatttaaaggactaacttgttataaacatctaacttaaaggatcg 19236128  T
Q  256 tggtgatatttggcctatttacaatgttttcggggtttacacttatgcgtt-------------cagactagtaaattagtctttgatggtaacattctt 342  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||             ||||||||||||||||||||||||||||||||||||    
T  19236127 tggtgatatttggcctatttacaatgtttttggggtttacacttatgagtttatatgcacagttcagactagtaaattagtctttgatggtaacattctt 19236028  T
Q  343 ttgaggagacgtaatgaatgtacatatacaatcttattgccaaaattacaatttgaagctaataagcattttaaccttctaaaaattaattaatgatgcc 442  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19236027 ttgaggagacgtaatgaatgtacatatacaatcgtattgccaaaattacaatttgaagctaataagcattttaaccttctaaaaattaattaatgatgcc 19235928  T
Q  443 atgcactgaaagccctgttaggatcaaaatactggtttgtgtgttatggtaatttgagctttgtaatattccttaagcattta 525  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19235927 atgcactgaaggccctgttaggatcaaaatactggtttgtgtgttatggtaatttgagctttgtaatattccttaagcattta 19235845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 15947763 - 15947867
Alignment:
Q  149 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagtt 246  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||  ||| | ||||| |||||||| |  |||||||||||||||||||||||||||||| ||    
T  15947763 tgatgaaaatatgataatggtgcagatattttatgacttaaaaggaccaatttgtaacaaaaa-agcttaaaggactaacttgttataaacatctaactt 15947861  T
Q  247 aaagga 252  Q
    ||||||    
T  15947862 aaagga 15947867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 28292550 - 28292654
Alignment:
Q  149 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagtt 246  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||  ||| | ||||| |||||||| |  |||||||||||||||||||||||||||||| ||    
T  28292550 tgatgaaaatatgataatggtgcagatattttatgacttaaaaggaccaatttgtaacaaaaa-agcttaaaggactaacttgttataaacatctaactt 28292648  T
Q  247 aaagga 252  Q
    ||||||    
T  28292649 aaagga 28292654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 19235844 - 19235807
Alignment:
Q  561 acattgcttgagaatctggctagagtagtttataaaca 598  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19235844 acattgcttgagaatctggctagagtagtttataaaca 19235807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 15183641 - 15183562
Alignment:
Q  174 atattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagttaaagga 252  Q
    ||||||| ||||||||  ||| | ||||| |||||||| || |||||||||||||||||||||| ||| ||| ||||||||    
T  15183641 atattttatgacttaaaaggaccaatttgtaacaaaaa-aacttaaaggactaacttgttataatcatgtaacttaaagga 15183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 15939399 - 15939506
Alignment:
Q  149 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaa--aaagaatttaaaggactaacttgttataaacatctaag 244  Q
    ||||||||||| ||| | ||||| |||||||| ||| ||||  ||| | ||||| |||||  ||| || |||||||||||| || ||||||||||||||     
T  15939399 tgatgaaaatatgataatggtgcagatattttatgatttaaaaggaccaatttgtaacaacaaaaaaacttaaaggactaatttattataaacatctaac 15939498  T
Q  245 ttaaagga 252  Q
    ||||||||    
T  15939499 ttaaagga 15939506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 24754949 - 24754884
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaattt 98  Q
    ||||||||||||||| ||| |||||| || |||| ||| || |||| ||||||||| |||||||||    
T  24754949 caattttgtttcaaaccaagactgaataatacacctatcaaccctagttttgagagcggtgaattt 24754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 49703849 - 49703804
Alignment:
Q  212 atttaaaggactaacttgttataaacatctaagttaaaggatcgtg 257  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||    
T  49703849 atttaaataactaatttgttataaacatctaatttaaaggatcgtg 49703804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 35293019 - 35293235
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaaggt--aaacac 130  Q
    ||||||||||||||||||| |||||| || ||| ||||||| |||| ||||||||| | |||||||||||  ||||||||||||||||| ||  | | ||    
T  35293019 caattttgtttcaaatcaagactgaataatacatttatgaaccctaattttgagagcgatgaatttagacataccaacttaacattaaacgttcatatac 35293118  T
Q  131 ctttttagctgccgagtctgatgaaaataggatcacggtgctgatattttctgactt-aaggatcgatttgcaacaaaaagaatttaaaggactaacttg 229  Q
     |||||| ||   |||| | |||||||||| ||   ||||| ||||| ||||||||| |||||   ||||| |||||||| || ||||| |||||||||     
T  35293119 atttttaact---gagtttaatgaaaatagaatattggtgcagatatattctgacttaaaggagtaatttgtaacaaaaataacttaaatgactaactta 35293215  T
Q  230 ttataaacatctaagttaaa 249  Q
    |||||||||| ||| |||||    
T  35293216 ttataaacatttaacttaaa 35293235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 24195026 - 24195110
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacat 117  Q
    |||||||||||||| |||| |||||| ||||||||| |||| |||| ||||||||||| |||| || |||  |||||||||||||    
T  24195026 caattttgtttcaagtcaagactgaataacacacttttgaaccctaattttgagagtgatgaaattggacataccaacttaacat 24195110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 28201648 - 28201582
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaattta 99  Q
    ||||||||||||||| ||| |||||| || |||| | |||| |||| ||||||||| ||||||||||    
T  28201648 caattttgtttcaaaccaagactgaataaaacacatgtgaatcctagttttgagagcggtgaattta 28201582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 3161502 - 3161461
Alignment:
Q  80 ttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    |||||||||||||||||||||||  || ||||||||||||||    
T  3161502 ttttgagagtggtgaatttagacccacaaacttaacattaaa 3161461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 47312417 - 47312458
Alignment:
Q  211 aatttaaaggactaacttgttataaacatctaagttaaagga 252  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  47312417 aatttaaaggactaacttattataaacatgtaatttaaagga 47312458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 48546926 - 48546862
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaattt 98  Q
    ||||||||||| |||| || |||||||| ||||| |||||| |||| || ||||||||||||||||    
T  48546926 caattttgttt-aaataaagactgaacatcacacatatgaaccctagttctgagagtggtgaattt 48546862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 24194781 - 24194729
Alignment:
Q  202 aacaaaaagaatttaaaggactaacttgttataaacatctaagttaaaggatc 254  Q
    |||||||| || ||| | |||||||||||||||||||| ||| ||||||||||    
T  24194781 aacaaaaaaaacttacaagactaacttgttataaacatataacttaaaggatc 24194729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 33282823 - 33282911
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    ||||||| ||||||||||||| | || || |||| |||||| |||| |||| ||| ||||||||||||||  |||||||||||||||||    
T  33282823 caattttttttcaaatcaaaatttaataatacacctatgaaccctaattttaagaatggtgaatttagacctaccaacttaacattaaa 33282911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 22223791 - 22223705
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    ||||||||||| |||||||||||||  || |||| |||||| |||| ||||||||| ||| |||| | ||  | |||||||||||||||    
T  22223791 caattttgttttaaatcaaaactga--aatacacatatgaatcctagttttgagagcggtaaattcacacctatcaacttaacattaaa 22223705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 8795707 - 8795619
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    |||||||||||  |||||| || ||| |||||||||||||   ||| |||||||||   ||||||| |||  |||||||||||||||||    
T  8795707 caattttgttttgaatcaagaccgaataacacacttatgagctctagttttgagagcaatgaatttggacaaaccaacttaacattaaa 8795619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 32424275 - 32424362
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    |||||||||||||||  ||||  ||| |||||||||||||| |||| ||||||||||| |||| |||||||  |||| |||||||||||    
T  32424275 caattttgtttcaaactaaaatcgaataacacacttatgaaccctaattttgagagtgttgaa-ttagacgttccaaattaacattaaa 32424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 18142795 - 18142749
Alignment:
Q  205 aaaaagaatttaaaggactaacttgttataaacatctaagttaaagg 251  Q
    ||||| || |||||||||||||||||||||||||||||| |||||||    
T  18142795 aaaaaaaaattaaaggactaacttgttataaacatctaacttaaagg 18142749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 9555251 - 9555364
Alignment:
Q  144 gagtctgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatct 241  Q
    |||| |||||||| ||||||   |||||  ||||||| ||||||||  ||||| ||||| ||| |||| || ||||| || ||||||||||||| ||| |    
T  9555251 gagtttgatgaaattaggatactggtgcaaatattttatgacttaaaaggatcaatttgtaactaaaaaaacttaaaagagtaacttgttataatcatgt 9555350  T
Q  242 aagttaaaggatcg 255  Q
    || |||||||||||    
T  9555351 aacttaaaggatcg 9555364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 35171058 - 35171163
Alignment:
Q  144 gagtctgatgaaaataggatcacggtgctgatattttctgacttaag-gatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatcta 242  Q
    |||| |||||||| |||||| | |||||  ||||||| ||||||||  || | ||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  35171058 gagtttgatgaaattaggataatggtgcatatattttatgacttaaatgaccaatttgtaacaaaaaaaacttaaag-actaacttgttataatcatcta 35171156  T
Q  243 agttaaa 249  Q
    | |||||    
T  35171157 acttaaa 35171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 4606235 - 4606150
Alignment:
Q  36 ttttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    |||| ||||||||||| || ||| || ||||||||||| |||| |||| |||  | ||||||| |||  |||||||||||||||||    
T  4606235 ttttctttcaaatcaagaccgaataatacacttatgaaccctagttttaagatggatgaatttggacataccaacttaacattaaa 4606150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 37295046 - 37294981
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaattt 98  Q
    ||||||| ||| ||||||| |||||| || ||||||||||| |||| ||||||||| ||| |||||    
T  37295046 caattttattttaaatcaagactgaataagacacttatgaaccctatttttgagagcggttaattt 37294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 1130659 - 1130551
Alignment:
Q  144 gagtctgatgaaaataggatcacggtgctgatattttctgacttaag-gatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatcta 242  Q
    |||| |||| |||||||||| | | ||| |||||||| ||||||||  || | ||||| |||||||| || ||||||||||||||||||||||||| | |    
T  1130659 gagtttgattaaaataggataatgatgcagatattttatgacttaaaagaccaatttgtaacaaaaa-aacttaaaggactaacttgttataaacagcaa 1130561  T
Q  243 agttaaagga 252  Q
    | ||||||||    
T  1130560 acttaaagga 1130551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 43080817 - 43080781
Alignment:
Q  216 aaaggactaacttgttataaacatctaagttaaagga 252  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43080817 aaaggactaacttgttataatcatctaagttaaagga 43080781  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 9158529 - 9158496
Alignment:
Q  220 gactaacttgttataaacatctaagttaaaggat 253  Q
    |||||||||||||||||||||||| |||||||||    
T  9158529 gactaacttgttataaacatctaacttaaaggat 9158496  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 83717 - 83805
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    ||||||||||||||||| |||||||  || ||||||||| | |||  ||  ||||||| |||||||||||  ||||| |||| ||||||    
T  83717 caattttgtttcaaatctaaactgattaatacacttatggatccttgttcagagagtgatgaatttagacctaccaaattaatattaaa 83805  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 21436880 - 21436836
Alignment:
Q  205 aaaaagaatttaaaggactaacttgttataaacatctaagttaaa 249  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||    
T  21436880 aaaaaaaacttaaaggactaacttgttataatcatctaacttaaa 21436836  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 33013101 - 33013133
Alignment:
Q  224 aacttgttataaacatctaagttaaaggatcgt 256  Q
    |||||||||||||||||||| ||||||||||||    
T  33013101 aacttgttataaacatctaacttaaaggatcgt 33013133  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 3839283 - 3839195
Alignment:
Q  33 caattttgtttcaaatcaaaactgaacaacacacttatgaagcctacttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    |||||||||||||||||||| ||||| || | || ||| || |||||||||| ||| |||||| ||  ||  |||||||||||||||||    
T  3839283 caattttgtttcaaatcaaagctgaataataaacctataaaccctacttttgtgagcggtgaaatttaacttaccaacttaacattaaa 3839195  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 30154293 - 30154252
Alignment:
Q  80 ttttgagagtggtgaatttagacggaccaacttaacattaaa 121  Q
    ||||||||||||||| |||||||  |||||||||||||||||    
T  30154293 ttttgagagtggtgattttagacataccaacttaacattaaa 30154252  T

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