View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5078-Insertion-7 (Length: 187)

Name: NF5078-Insertion-7
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5078-Insertion-7
NF5078-Insertion-7
[»] chr3 (4 HSPs)
chr3 (40-187)||(20605945-20606092)
chr3 (102-187)||(20593126-20593211)
chr3 (40-104)||(20590916-20590980)
chr3 (8-35)||(20590204-20590231)
[»] chr6 (2 HSPs)
chr6 (40-169)||(5155401-5155530)
chr6 (68-180)||(17537709-17537821)
[»] chr2 (3 HSPs)
chr2 (40-160)||(24509713-24509834)
chr2 (68-160)||(32152777-32152870)
chr2 (41-139)||(23739782-23739880)
[»] chr7 (2 HSPs)
chr7 (68-160)||(24176405-24176498)
chr7 (128-161)||(730150-730183)
[»] chr4 (3 HSPs)
chr4 (128-161)||(31229948-31229981)
chr4 (128-161)||(31234757-31234790)
chr4 (128-161)||(31234881-31234914)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 5e-64; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 20605945 - 20606092
Alignment:
Q  40 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 139  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  20605945 tacttagcgcgcaagttatcttagtgcatttgtaatttcacttacatttacatttcatttgtattgcatgtagttagttacagatctcagcttctatata 20606044  T
Q  140 agctactcttgtaaccgttttcatcaattaattaatacattctctctc 187  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  20606045 agctactcttgtaaccgttttcatcaattaatcaatacattctttctc 20606092  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 20593126 - 20593211
Alignment:
Q  102 attgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaattaatacattctctctc 187  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  20593126 attgcatgtagttagttagagatcagagcttctatataagctactcttgtaactgttttcatcaattaatcaatacattctctctc 20593211  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20590916 - 20590980
Alignment:
Q  40 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtatt 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20590916 tacttagcgcgcaagttatcttagtgcctttgtaatttcacttacatttacatttcatttgtatt 20590980  T

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Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 8 - 35
Target Start/End: Complemental strand, 20590231 - 20590204
Alignment:
Q  8 taagcaatattggttttctacttctgat 35  Q
    ||||||||||||||||||||||||||||    
T  20590231 taagcaatattggttttctacttctgat 20590204  T

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Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 5155530 - 5155401
Alignment:
Q  40 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 139  Q
    ||||||||| |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  5155530 tacttagcgtgcaagttatcttggtgcatttgtaatttcactttcatatacatttcatttgtattgcatgtagttagttagaggacttagcttctatata 5155431  T
Q  140 agctactcttgtaaccgttttcatcaatta 169  Q
    ||||||||||||||||||||||||||||||    
T  5155430 agctactcttgtaaccgttttcatcaatta 5155401  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 17537821 - 17537709
Alignment:
Q  68 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaat 167  Q
    |||||||||||  || ||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||    
T  17537821 tttgtaatttcagtttcatttacatttcatttgtagtgcatctagttagttagagatcttagcttatatataagatactcttgtaaccgttttccacaat 17537722  T
Q  168 taattaatacatt 180  Q
    |||| ||||||||    
T  17537721 taatcaatacatt 17537709  T

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Target: chr2 (Bit Score: 50; Significance: 7e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 24509713 - 24509834
Alignment:
Q  40 tacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 139  Q
    |||||||||||||||||   |||| || ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  24509713 tacttagcgcgcaagtttcattagagcttttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 24509812  T
Q  140 -agctactcttgtaaccgtttt 160  Q
     ||||| || ||||||| ||||    
T  24509813 tagctattcctgtaaccatttt 24509834  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 32152870 - 32152777
Alignment:
Q  68 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 160  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| |  ||||||||||||    
T  32152870 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattactgtaaccgtttt 32152777  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 23739782 - 23739880
Alignment:
Q  41 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 139  Q
    ||||||||||||||||   || | || ||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  23739782 acttagcgcgcaagtttcattcgagcttttgtaatttcactttgatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 23739880  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 24176498 - 24176405
Alignment:
Q  68 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 160  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| || ||||||||||||    
T  24176498 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattcctgtaaccgtttt 24176405  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 730183 - 730150
Alignment:
Q  128 agcttctatataagctactcttgtaaccgttttc 161  Q
    |||||||||||||||||||| |||||||||||||    
T  730183 agcttctatataagctactcctgtaaccgttttc 730150  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 31229981 - 31229948
Alignment:
Q  128 agcttctatataagctactcttgtaaccgttttc 161  Q
    ||||||||||||||||||||||||||||||||||    
T  31229981 agcttctatataagctactcttgtaaccgttttc 31229948  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 31234790 - 31234757
Alignment:
Q  128 agcttctatataagctactcttgtaaccgttttc 161  Q
    ||||||||||||||||||||||||||||||||||    
T  31234790 agcttctatataagctactcttgtaaccgttttc 31234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 31234914 - 31234881
Alignment:
Q  128 agcttctatataagctactcttgtaaccgttttc 161  Q
    ||||||||||||||||||||||||||||||||||    
T  31234914 agcttctatataagctactcttgtaaccgttttc 31234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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