View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5078_high_6 (Length: 251)
Name: NF5078_high_6
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 9908711 - 9908488
Alignment:
| Q |
13 |
aatatctaatagatcatactttaatgttggttattttcatttaatacaggtggtttatgcctgttaatgttggactcaccttcttgattggagggatttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9908711 |
aatatctaatagatcatactttaatgttggttatgttcatttaatacaggtggtttatgcctgttaatgttggactcaccttcttgattggagggatttt |
9908612 |
T |
|
| Q |
113 |
aggatggatattggtaaaattactaaggcctaatttgaaagtggaaggtcttattattgcttcatgttcatcaggtatatatcataccatcaaatcaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9908611 |
aggatggatattggtaaaattactaaggcctaatttgaaagtggaaggtcttattattgcttcatgttcatcaggtatatatcataccatcaaatcaaag |
9908512 |
T |
|
| Q |
213 |
ttagttgatatattatgaaaaact |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
9908511 |
ttagttgatatattatgaaaaact |
9908488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 9863671 - 9863831
Alignment:
| Q |
76 |
ttaatgttggactcaccttcttgattggagggattttaggatggatattggtaaaattactaaggcctaatttgaaagtggaaggtcttattattgcttc |
175 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9863671 |
ttaatgttggactcaccttcttaattggagggattttaggatggatattagttaaattactaaggcctaatttgaaagtagaaggtcttattattgcttc |
9863770 |
T |
|
| Q |
176 |
atgttcatcaggtatatatcataccatcaaatcaaagttagttgatatattatgaaaaact |
236 |
Q |
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| T |
9863771 |
atgctcatcaggtatatatcataccatcaattcaaagtttgatgctatattatgaaaaact |
9863831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 9878504 - 9878370
Alignment:
| Q |
56 |
atacaggtggtttatgcctgttaatgttggactcaccttcttgattggagggattttaggatggatattggtaaaattactaaggcctaatttgaaagtg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| |
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| T |
9878504 |
atacaggtggtttatgcctgttaatgttggactcaccttcttaattggagggattttaggatggttattagtaaaattactaagacctaacttgaaagta |
9878405 |
T |
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| Q |
156 |
gaaggtcttattattgcttcatgttcatcaggtat |
190 |
Q |
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|||||||||||||||||| | |||||||||||||| |
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| T |
9878404 |
gaaggtcttattattgctgcttgttcatcaggtat |
9878370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 9898443 - 9898309
Alignment:
| Q |
56 |
atacaggtggtttatgcctgttaatgttggactcaccttcttgattggagggattttaggatggatattggtaaaattactaaggcctaatttgaaagtg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| |
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| T |
9898443 |
atacaggtggtttatgcctgttaatgttggactcaccttcttaattggagggattttaggatggttattagtaaaattactaagacctaacttgaaagta |
9898344 |
T |
|
| Q |
156 |
gaaggtcttattattgcttcatgttcatcaggtat |
190 |
Q |
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|||||||||||||||||| | |||||||||||||| |
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| T |
9898343 |
gaaggtcttattattgctgcttgttcatcaggtat |
9898309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 30946738 - 30946868
Alignment:
| Q |
59 |
caggtggtttatgcctgttaatgttggactcaccttcttgattggagggattttaggatggatattggtaaaattactaaggcctaatttgaaagtggaa |
158 |
Q |
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||||||||||||||| ||||| | |||||||||||||| |||||||||| | ||||||||| | || || || |||| ||| || ||||||||||| |
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| T |
30946738 |
caggtggtttatgccagttaacatcggactcaccttcttatttggagggatccttggatggataattgttaagttgctaaagccaaacatgaaagtggaa |
30946837 |
T |
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| Q |
159 |
ggtcttattattgcttcatgttcatcaggta |
189 |
Q |
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||||||||||||||||| ||||||||||||| |
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| T |
30946838 |
ggtcttattattgcttcttgttcatcaggta |
30946868 |
T |
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