View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5078_low_2 (Length: 405)
Name: NF5078_low_2
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 391
Target Start/End: Complemental strand, 24640620 - 24640250
Alignment:
| Q |
21 |
ctacaaatttagtactaaatcattcctttcacctgcttctcattgacttatctggtcggttttcatgtatattttgcaattcatgtttttcttttatcac |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640620 |
ctacaaatttagtactaaatcattcctttcacctgcttctcattgacttatctggtcagttttcatgtatattttgcaattcatgtttttcttttatcac |
24640521 |
T |
|
| Q |
121 |
aatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatgta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640520 |
aatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatgta |
24640421 |
T |
|
| Q |
221 |
ttatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctccttgcactcattgta |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24640420 |
ttatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctccttacactcattgta |
24640321 |
T |
|
| Q |
321 |
agatttttctgtgcttagctctgtcttttaaacttgcacaggctctcatatctgaatctagcagggatttt |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640320 |
agatttttctgtgcttagctctgtcttttaaacttgcacaggctctcatatctgaatctagcagggatttt |
24640250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 391
Target Start/End: Complemental strand, 24675723 - 24675350
Alignment:
| Q |
21 |
ctacaaatttagtactaaatcattcctttcacctgcttctcattgacttatctggtcggttttcatgtatattttgcaattcatgtttttcttttat--- |
117 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||| |||| | |
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| T |
24675723 |
ctacaattttaggactaaatcattccttttacctgcttctcattcacttatctggtcatttttcatgtatttcttgcaattcatgttttttttttttgtc |
24675624 |
T |
|
| Q |
118 |
-cacaatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaataca |
216 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||| || ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
24675623 |
tcacaatttagggatttaataattgatttgtcattgtacttgaggagcgtgaagaacttacaattcattgaaactgtttcgaaaaatggtagttaatacg |
24675524 |
T |
|
| Q |
217 |
tgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctccttgcactcat |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| | |||||||||||||||| ||||||||||||| |||| |
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| T |
24675523 |
tgtattatttgcagagttcagcaaacctgaagccacattatgcagcctgtttttctcatatagctgggatgattctttttaaaggtctccttgcagtcat |
24675424 |
T |
|
| Q |
317 |
tgtaagatttttctgtgcttagctctgtcttttaaacttgcacaggctctcatatctgaatctagcagggatttt |
391 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||| ||| ||||||| ||||||| ||||| ||||||| |
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|
| T |
24675423 |
tgtaagatttttctgcagttatctctgtcttttcaacttgtacaagctctca-atctgaaattagcaaggatttt |
24675350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 24691820 - 24691545
Alignment:
| Q |
21 |
ctacaaatttagtactaaatcattcctttcacctgcttctcattgacttatctggtcggttttcatgtatattttgcaattcatgtttttcttttatcac |
120 |
Q |
| |
|
|||||| |||||||||| ||||||||||| | ||||||||||| || ||||||||| |||||||||||||||| ||||| ||||||||||||| |||| |
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|
| T |
24691820 |
ctacaattttagtactagatcattcctttttcttgcttctcattcacatatctggtcatttttcatgtatattttacaatt-atgtttttcttttctcac |
24691722 |
T |
|
| Q |
121 |
aatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatgta |
220 |
Q |
| |
|
|||||| ||||||||||| |||| ||||| |||||||||| ||| ||||||| |||||||| ||| |||||||||||||| |||||||||||||| |||| |
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|
| T |
24691721 |
aatttatggatttaataattggtctgtcattgtacttaaggagcatgaagaacttacaattcattgcaactgtttcgaaatatggtagttaatacttgta |
24691622 |
T |
|
| Q |
221 |
ttatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattcttttta |
297 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| ||||||||| | ||||| |||||||||||||||| |
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|
| T |
24691621 |
ttatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattcttttta |
24691545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 24713989 - 24713761
Alignment:
| Q |
35 |
ctaaatcattcctttcacctgcttctcattgacttatctggtcggttttcatgtatattttgcaattcatgtttttcttttatcacaatttagggattta |
134 |
Q |
| |
|
|||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||| |||||| |||||| || ||||||| |||||||||||||||||| |
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| T |
24713989 |
ctaaatcatttcttttaccagcttctcattcacttatctggtcacttttcatgtattttttgctattcatcttattcttttctcacaatttagggattta |
24713890 |
T |
|
| Q |
135 |
ataagtggtttgtcactgtacttaagtagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatgtattatttgcagagtt |
234 |
Q |
| |
|
|||| ||||||| || | | ||||| ||| |||||||||||| || | | ||| ||||||||||||||||||| |||| ||||| || ||||||||| |
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|
| T |
24713889 |
ataattggtttgccattattcttaatgagcaggaagaatttacattttagtgcaagggtttcgaaaaatggtagttgatacttgtataatatgcagagtt |
24713790 |
T |
|
| Q |
235 |
cagcaaacctgaagcgacattatgcaacc |
263 |
Q |
| |
|
|||||||| | |||| | ||||||||||| |
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|
| T |
24713789 |
cagcaaacatcaagcaatattatgcaacc |
24713761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 24719120 - 24718956
Alignment:
| Q |
80 |
ttttcatgtatattttgcaattcatgtttttct-tttatcacaatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttaca |
178 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| | ||| | |||||||||||||||||||| |||||||||| ||||||| || ||| ||||||||||||| |
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|
| T |
24719120 |
ttttcttgtattttttgcaattcatattttaccattttttacaatttagggatttaataattggtttgtcattgtacttgaggagcatgaagaatttaca |
24719021 |
T |
|
| Q |
179 |
attaattccaactgtttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacc |
243 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
24719020 |
attcattgcaactatttcaaaaaatggtagttaatacatgtattatatgcagagttcagcaaacc |
24718956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 24652530 - 24652352
Alignment:
| Q |
92 |
ttttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttacaattaattccaact |
191 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| || |||| |||||| ||||||| ||| | ||| ||||||| ||| ||| ||| ||||| |
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|
| T |
24652530 |
ttttgcaattcatgttattcttttctcacaatttaggggttgaatagttggtttttcactgttcttgatgagccagaagaatgtacgattcattgcaact |
24652431 |
T |
|
| Q |
192 |
gtttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgttttt |
270 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||| |
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|
| T |
24652430 |
gtttcgtaaaattgtagttaatacatgtattatttgcagagttcagcaaaaatcaagcaatattatgcaacctgttttt |
24652352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 24686452 - 24686296
Alignment:
| Q |
21 |
ctacaaatttagtactaaatcattcctttcacctgcttctcattgacttatctggtcggttttcatgtatattttgcaattcatgtttttcttttatcac |
120 |
Q |
| |
|
|||||||||||| ||||||| || ||||| |||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |
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|
| T |
24686452 |
ctacaaatttaggactaaattat-ccttttacctgcttctcattcacttatctggtcatttttcatgtactttttgcaatacatgtttttcttttctcac |
24686354 |
T |
|
| Q |
121 |
aatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaatttaca |
178 |
Q |
| |
|
||||||||| |||||| | |||||||||| ||| ||| | ||| ||||||||||||| |
|
|
| T |
24686353 |
aatttagggttttaattattggtttgtcattgttcttgacgagcatgaagaatttaca |
24686296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 24632778 - 24632644
Alignment:
| Q |
111 |
cttttatcacaatttagggatttaataagtggtttg-tcactgtacttaagtagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagt |
209 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||| ||| | |||| ||||||||||||| | ||| ||| |||||||||||||||||| |
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|
| T |
24632778 |
cttttctcacaatttagggatttaataatcggttttatcactgttcttga-tagcatgaagaatttacattagattgcaagggtttcgaaaaatggtagt |
24632680 |
T |
|
| Q |
210 |
t-aatacatgtattatttgcagagttcagcaaacct |
244 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24632679 |
ttaacacatgtattatttgcagagttcagcaaacct |
24632644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 24686299 - 24686180
Alignment:
| Q |
213 |
tacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctccttgcac |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||| | ||||||||||||||||||| | ||||| || ||| |||||||| | ||||||||||||| |
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|
| T |
24686299 |
tacatgtattatttgcagaattcagcaaacatcaagcaatattatgcaacctgtttttctcgtatcgctggaatggttctttttggtggtctccttgcac |
24686200 |
T |
|
| Q |
313 |
tcattgtaagatttttctgt |
332 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
24686199 |
ccaatgtaagattttgctgt |
24686180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 24717148 - 24717011
Alignment:
| Q |
192 |
gtttcgaaaaatggtagtta-atacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgatt |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||| |||| ||||||| |||| | || ||| | |
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|
| T |
24717148 |
gtttcgaaaaatggtagtttgatacatgtattatttgcagagttcagcaaacctcaagcaatattatg-aaccagtttttcttgtatctt--ggttgagt |
24717052 |
T |
|
| Q |
291 |
ctttttagaggtctccttgcactcattgtaagatttttctg |
331 |
Q |
| |
|
|||||| | |||||||| ||| || ||||||||||||||| |
|
|
| T |
24717051 |
ctttttggtggtctcctagcatccaatgtaagatttttctg |
24717011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 24654702 - 24654621
Alignment:
| Q |
93 |
tttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaagtagcgtgaagaattt |
175 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||| ||| ||| | ||| |||||||||| |
|
|
| T |
24654702 |
tttgcaattcatatttttctttgcttacaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaattt |
24654621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 4037573 - 4037617
Alignment:
| Q |
251 |
acattatgcaacctgtttttcacctatcgtagggatgattctttt |
295 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
4037573 |
acattatgcaacctgtttttctcatatcgttgggatgattctttt |
4037617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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