View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5078_low_4 (Length: 275)
Name: NF5078_low_4
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 34382159 - 34382041
Alignment:
| Q |
12 |
catcatcaccaatctccttctttgcacaaaccagtaaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatggtaccatccagccacc |
111 |
Q |
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| T |
34382159 |
catcatcatcaatctccttctttgcacaaaccagttaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatagtaccatccagccacc |
34382060 |
T |
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| Q |
112 |
ctcagggtccatgtattca |
130 |
Q |
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| T |
34382059 |
ctcagggtccatgtattca |
34382041 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 34381966 - 34381915
Alignment:
| Q |
205 |
acctgtgatagggttatttgtatgtcatcatgagctttgcggcggcctaatc |
256 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34381966 |
acctgtgatagggttatgtgtatgtcatcatgagctttgcggcggcctaatc |
34381915 |
T |
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