View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5078_low_8 (Length: 230)
Name: NF5078_low_8
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5078_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 32695619 - 32695810
Alignment:
| Q |
17 |
tccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgcacttatg |
116 |
Q |
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| T |
32695619 |
tccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgatcacaataaagccctagttgtgtataacaacaatgctcatcatcgcacttatg |
32695718 |
T |
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| Q |
117 |
aagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatggttatggttatgga |
208 |
Q |
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| T |
32695719 |
aagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatggttatggttatgga |
32695810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 32679555 - 32679728
Alignment:
| Q |
19 |
caaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgcacttatgaa |
118 |
Q |
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| T |
32679555 |
caaagaagattgtttaattgaagaaggtggc---aattttgatgatcacaataaagccctagttgtgtataacaacaaaggtca------cagttatgaa |
32679645 |
T |
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| Q |
119 |
gcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatggttatgg |
201 |
Q |
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| T |
32679646 |
gcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttatgg |
32679728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 32686606 - 32686744
Alignment:
| Q |
47 |
ggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaag |
146 |
Q |
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| T |
32686606 |
ggtggcaattatgatgatcataatagagccatggttgtgtattacaacaatgctca------cacttatgaggcgttgcgaaatccaagtgaaacacaag |
32686699 |
T |
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| Q |
147 |
ttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
194 |
Q |
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| T |
32686700 |
ttgtggatg---aacaagatcaagaagatggacatggtggttactatg |
32686744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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