View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5078_low_9 (Length: 229)

Name: NF5078_low_9
Description: NF5078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5078_low_9
NF5078_low_9
[»] chr3 (6 HSPs)
chr3 (25-108)||(11385942-11386025)
chr3 (25-89)||(11376141-11376205)
chr3 (25-80)||(11363383-11363438)
chr3 (97-162)||(11363483-11363548)
chr3 (97-129)||(11363410-11363442)
chr3 (104-132)||(11386037-11386065)
[»] chr7 (1 HSPs)
chr7 (25-89)||(17186211-17186275)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 11385942 - 11386025
Alignment:
Q  25 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacttaaatggactaaatagaaaggggtatgctccattta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11385942 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacttaaatggactaaatagaaaagggtatgctccattta 11386025  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 11376141 - 11376205
Alignment:
Q  25 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacttaaatggactaaataga 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11376141 tataaagcatgtatctaattgtgtcatacatgtcacacatccataatttaaatggactaaataga 11376205  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 11363383 - 11363438
Alignment:
Q  25 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacttaaatgga 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11363383 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacctaaatgga 11363438  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 11363483 - 11363548
Alignment:
Q  97 atgctccatttaggttatagatgtgtgacatgtggcnnnnnnngatcctagtattgagatttataa 162  Q
    |||||||||||||||||| |||||||||||||||||       |||| ||| ||||||||||||||    
T  11363483 atgctccatttaggttatggatgtgtgacatgtggcaaaaaaagatcttaggattgagatttataa 11363548  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 11363442 - 11363410
Alignment:
Q  97 atgctccatttaggttatagatgtgtgacatgt 129  Q
    |||||||||||||||||| ||||||||||||||    
T  11363442 atgctccatttaggttatggatgtgtgacatgt 11363410  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 11386037 - 11386065
Alignment:
Q  104 atttaggttatagatgtgtgacatgtggc 132  Q
    |||||||||||||||||||||||||||||    
T  11386037 atttaggttatagatgtgtgacatgtggc 11386065  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 17186275 - 17186211
Alignment:
Q  25 tataaagcatgtatctaattgtgtcatacatgtcacacatccataacttaaatggactaaataga 89  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17186275 tataaagcatgtatctaattgtgtcatacatgtcacacgtccataacttaaatggactaaataga 17186211  T

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