View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-1 (Length: 1126)
Name: NF5079-Insertion-1
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 964; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 964; E-Value: 0
Query Start/End: Original strand, 8 - 1072
Target Start/End: Complemental strand, 26276433 - 26275363
Alignment:
| Q |
8 |
aaatggttagaacaatctattgtggaatctcttaatatccctctgcacatgcaccctgcccttaacatgaaggtagcagattacattctggatggtaatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276433 |
aaatggttagaacaatctattgtggaatctcttaatatccctctgcacatgcaccctgcccttaacatgaaggtagcagattacattctggatggtaatt |
26276334 |
T |
|
| Q |
108 |
ggaatatccccatgtatctgatacaaaagtctaaagagttagcaaagcaaattctcacggttaccctctctattgatgattcccatgataggctgaattg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276333 |
ggaatatccccatgtatctgatacaaaagtctaaagagttagcaaagcaaattctcacggttaccctctctattgatgattcccatgataggctgaattg |
26276234 |
T |
|
| Q |
208 |
gagggcctccgttgatggaaaacttactagcaaaattgcgcctataacaccttgcgcatctttggtcctaaggtgaggtggtgtaagttagtttggaaca |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276233 |
gagggcctctgttgatggaaaacttactagcaaaattgcgcctataacaccttgcgcatctttggtcctaaggtgaggtggtgtaagttagtttggaaca |
26276134 |
T |
|
| Q |
308 |
atttcgtccctccctctaggtctttcattttctggagattagctaacaacaagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtc |
407 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276133 |
atttcgtccctcc-tctaggtctttcattttctggagattagctaacaacaagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtc |
26276035 |
T |
|
| Q |
408 |
aattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaacgcagaagctttggcagaggttgtgtactgggatt |
507 |
Q |
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| T |
26276034 |
aattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcccagaaacgcagaagctttggcagaggttgtgtactgggatt |
26275935 |
T |
|
| Q |
508 |
gaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275934 |
gaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattgaagcaaacaggttcagcaggtgttgatagcagcagttctgca |
26275835 |
T |
|
| Q |
608 |
cattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcattcgatggaacatctgtttcggagtgttattgtggaagtaggc |
707 |
Q |
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| T |
26275834 |
cattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcattcgatggaacatctgtttcggagtgttattgtggaagtaggc |
26275735 |
T |
|
| Q |
708 |
tgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatcacatctgtttgacctatatctgagctggcatttataaaggaaaa |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275734 |
tgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatcacatctgtttgacctatatctgagctggcatttataaaggaaaa |
26275635 |
T |
|
| Q |
808 |
attggatgccaacttaaacttgcaaatgacaatgaagaattgggatggctagaaacttgtattcacgtgctcttggatcacaactcaatgttgcaaatat |
907 |
Q |
| |
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||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26275634 |
attggatactaacataaacttgcaaatgacaatgaagaattgggttggctagaaacttgtattcacgtgctcttggatcacatctcaatgttgcaaatat |
26275535 |
T |
|
| Q |
908 |
aaattgcggcgactgcaatcgtagcacttcgatacaggtacgatacattgcatgtaactgttgagacatttaag-tttagatgtacatcagtg-caaaat |
1005 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||| |
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| T |
26275534 |
aaattgcggcgactgcaatcgtagcgcttcgatacaggtacgatgcattgcatgtaactgttgagacattgaagttttagatctacatcagtgccaaaat |
26275435 |
T |
|
| Q |
1006 |
acatgtcataaacccgcaacat-atagcagg-caaatgaaac-tcacatac-agc-atatggtcgacatttt |
1072 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||||||||| |
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| T |
26275434 |
acatgtcataaacccgcaacataatagcaggccaaatgaaacttcacatacaagcaatatggtcgacatttt |
26275363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 552 - 677
Target Start/End: Complemental strand, 39397955 - 39397830
Alignment:
| Q |
552 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
651 |
Q |
| |
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||||||||||||||||||||| ||| ||||| || || |||||||| |||||||||| | |||| || || ||||||||||||||| | ||||||| |
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| T |
39397955 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcggttctgcacacggtttggaagatttagatagaacgtaatgagcgttatttca |
39397856 |
T |
|
| Q |
652 |
ataataatgcgcattcgatggaacat |
677 |
Q |
| |
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||||||| ||| ||||| |||||||| |
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| T |
39397855 |
ataataaggcgaattcgttggaacat |
39397830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 43673526 - 43673411
Alignment:
| Q |
358 |
aagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattct |
457 |
Q |
| |
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|||||||| || ||||| ||||||| |||| | ||||| | ||||| | |||| ||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
43673526 |
aagatgccaacggatgaaaatcttaggaaacgaggctgcacaattgttttgatttgttgtttctgtcatcaacatgaagaaacctccagtcatattttct |
43673427 |
T |
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| Q |
458 |
tcagctgcccagaaac |
473 |
Q |
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|||||||||||||||| |
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| T |
43673426 |
tcagctgcccagaaac |
43673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 552 - 656
Target Start/End: Original strand, 23893197 - 23893301
Alignment:
| Q |
552 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
651 |
Q |
| |
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||||||||||||||||||||| ||| ||||| || || ||||||||||||||||||| | |||| || ||| ||||| |||||||| | ||||||| |
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| T |
23893197 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcagttctgcacacagtttggaagatttgaatagatcgtaatgagcgttatttca |
23893296 |
T |
|
| Q |
652 |
ataat |
656 |
Q |
| |
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||||| |
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|
| T |
23893297 |
ataat |
23893301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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