View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-4 (Length: 673)
Name: NF5079-Insertion-4
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Original strand, 54861956 - 54862623
Alignment:
| Q |
8 |
atatgattgacagttgacagcgttgctcattttaatgatttatgtgaaatagactgcagagttttcctataaatttttctgctaaataaaaggaagaatc |
107 |
Q |
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| T |
54861956 |
atatgattgatagttgacagcgttgctcattttaatgatttatgtgaaatagactgcagagttttcctataaatttttctgctaaataaaaggaagaatc |
54862055 |
T |
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| Q |
108 |
gatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaagatgaaagtgatggtgtattagatatataatggatgggaccc |
207 |
Q |
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| T |
54862056 |
gatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaagatgaaagtgatggtgtattagatatataatggacgggactc |
54862155 |
T |
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| Q |
208 |
tagtttttcaaatccttggtaggagcagaataaactcttgacaatggtctgaaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtga |
307 |
Q |
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| T |
54862156 |
tggtttttcaaatccttggtaggagcagaataaactct-gacaatggtctgaaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgg |
54862254 |
T |
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| Q |
308 |
aggatgtgtttctttttgttatctgcaatcattttgtgatgtagattctccatatatcctcatcgggtccttgttcatactcagacttttgtcaagtagc |
407 |
Q |
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| T |
54862255 |
aggatgtgtttctttttgttatctgtaattattttgtgatgtagattctccatatatcctcatcgggtccttgttcatactcagacttttgtcaagtagc |
54862354 |
T |
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| Q |
408 |
ttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtgacaaaattgttgttagtc---annnnnnnnnnngggttaacatg |
504 |
Q |
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| T |
54862355 |
ttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtgacaaaattgttgttagtcgttttttttttttttgggttaacatg |
54862454 |
T |
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| Q |
505 |
atattattatgaaattttaccaccgtttaacggtgattaatctccgtctgggaacttgtgggacacacaaggtgggttcttgtttctcaactgaattttt |
604 |
Q |
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| T |
54862455 |
atattagtatgaaattttaccaccgtttaacggtgattaatctccgtctgggaacttgtggggcacacaagatgggttcttgcttctcaactgaattttt |
54862554 |
T |
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| Q |
605 |
tccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttagtcgtatttctat |
673 |
Q |
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| T |
54862555 |
tccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttagtcgtatttctat |
54862623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 259 - 419
Target Start/End: Original strand, 54857374 - 54857537
Alignment:
| Q |
259 |
aaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcatttt---gtgatgtagattc |
355 |
Q |
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| T |
54857374 |
aaagtttgtcgatggtttgagtatccatcccagtttcccttggaagtggaggatgtgtttctttta-ttatatgtaattattattatgtgatgtagtttc |
54857472 |
T |
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| Q |
356 |
tccatata-tcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgttta |
419 |
Q |
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| T |
54857473 |
tccatctaatccccatcgggtccttgttcatactcagacttttgtgaattagcttgacttattta |
54857537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 54857160 - 54857199
Alignment:
| Q |
121 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
160 |
Q |
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| T |
54857160 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
54857199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 22310581 - 22310629
Alignment:
| Q |
537 |
gtgattaatctccgtctgggaacttgtgggacacacaaggtgggttctt |
585 |
Q |
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| T |
22310581 |
gtgactaatctccgtcagagaatttgtgggacacgcaaggtgggttctt |
22310629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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