View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-5 (Length: 665)
Name: NF5079-Insertion-5
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 662
Target Start/End: Original strand, 6916336 - 6916990
Alignment:
| Q |
8 |
acgtctactacattgctagctctatatgcacgtaattaacgataaccctttgagcatttacttttatcatcacaccaagaatcaacaacaaaaccaagag |
107 |
Q |
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| T |
6916336 |
acgtctactacattgctagctctatatgcacgtaattaacgataaccctttgagcatttacttttatcatcacaccaagaatcaacaacaaaaccaagag |
6916435 |
T |
|
| Q |
108 |
aagaaagtcataattacatttacaattcacaatcaagacagaaaaatttatgagttagcaatataaacattaatttatcctctatacccccaaagactaa |
207 |
Q |
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| T |
6916436 |
aagaaagtcataattacatttacaattcacaatcaagacagaaaaatttatgagttagcaatataaacattaatttatcctctatacccccaaagactaa |
6916535 |
T |
|
| Q |
208 |
ctaattaattaactaatctagtacatacatttgcacattaaactcagcaacaaatagttccagtaatcaaatnnnnnnntatgcaacatcatctttcatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
6916536 |
ctaattaattaactaatctagtacatacatttgcacattaaactcagcaacaaatagttccagtaatcaaattaaaaaatatgcaacatcatcattcatt |
6916635 |
T |
|
| Q |
308 |
caatcatgaacacaaatgctagtatcttcgtgatcccatttttcgcaacgacgacactctaggaaactcaccactactaacactaagtcgtggcgcttgt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6916636 |
caatcatgaacacaaatgctagtatcttcgtgatcccatttttcgcaacgacgacactctaggaaactcaccactactaacactaagtcgtggtgcttgt |
6916735 |
T |
|
| Q |
408 |
tggtgagtttgttgtccgggaggcgcattctccttaaccttccaaaccttaacggacttatccaaacttccactatacaaaatccactttcgctcgtgta |
507 |
Q |
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| T |
6916736 |
tggtgagtttgttgtccggggggcgcattctccttaaccttccaaaccttaacggacttatccaaacttccactatacaaaatccactttcgctcgtgta |
6916835 |
T |
|
| Q |
508 |
acatcacatcgagatccttctcagcagcgagacacttcaccggtccagtatgtccactcaacactgacatacaaacatgttcattagtaatcgatcgttt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916836 |
acatcacatcgagatccttctcagcagcgagacacttcaccggtccagtatgtccactcaacactgacatacaaacatgttcattagtaatcgatcgttt |
6916935 |
T |
|
| Q |
608 |
ccacacacaaattgccatgtcagcagaaccactaaacaccaaacttccagccgcc |
662 |
Q |
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| T |
6916936 |
ccacacacaaattgccatgtcagcagaaccactaaacaccaaacttccagccgcc |
6916990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 494
Target Start/End: Original strand, 6485300 - 6485346
Alignment:
| Q |
448 |
tccaaaccttaacggacttatccaaacttccactatacaaaatccac |
494 |
Q |
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||||||||||||| || ||||||||||| ||||||||||| |||||| |
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| T |
6485300 |
tccaaaccttaaccgatttatccaaactcccactatacaatatccac |
6485346 |
T |
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