View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-6 (Length: 454)
Name: NF5079-Insertion-6
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 45317522 - 45317063
Alignment:
| Q |
8 |
ataacttgggtaatctgtataaaactaaggcttcaaagtcttttgttgagtgactttgtagccatgtagcacaaaacacttcaagttaaatgtgtgcatg |
107 |
Q |
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| T |
45317522 |
ataacttgggtaatctgcataaaactaaggcttcaaagtcttttgttgagtgactttgtagttatctagcacaaa-cacttcaagttaaatgtgtgcatg |
45317424 |
T |
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| Q |
108 |
agagtccatcatgtgtcggtgtctcacaccaatattt-------------tcattttcattttctgaaccagaatcattttccaagggattaaattgatg |
194 |
Q |
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| T |
45317423 |
agagtccatcatgtgtcggtgcctcacaccaatactagtggtacattcaatcattttcattttctgaaccagaatcattttccaagggattaaattgatg |
45317324 |
T |
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| Q |
195 |
agtacaggttctcctatttattaatatattcattgagaaaatcatcatcacagcaccctgcaatcaatgtcgaagagggttcctttatttacaagactga |
294 |
Q |
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| T |
45317323 |
agtacaggttctcctatttattaatatattcattgagaaaattatcatcacagcaccctgcaatcaatgtcgaagagagttcctttatttacaagacaaa |
45317224 |
T |
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| Q |
295 |
aaaaa-tgtatttgcatcagatgcaatattctagagtagtttctttagttgcttgagcaactgtacaatcttgttaaagaacagaaattttagttaagag |
393 |
Q |
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| T |
45317223 |
aaaaaatgtatttgcatcagatgcaatattctagagtagcttctttagttgctcaagcaactgtacaatcttgttaaagaacagaaattttagttaagaa |
45317124 |
T |
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| Q |
394 |
atctcttaggttgaactgctatatgcctatatactccagaaaaacattcaagtttcatcca |
454 |
Q |
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| T |
45317123 |
atctcttaggttgaactgctatatgcctatatactccagaaaaacattcaagtttcatcca |
45317063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 45326636 - 45326454
Alignment:
| Q |
193 |
tgagtacaggttctcctatttattaatatattcattgagaaa---atcatcat---cacagcaccctgcaatcaatgtcgaagagggttcctttatttac |
286 |
Q |
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| T |
45326636 |
tgagtacaatttctcctatttattaacatattcattcagaaatgtatcatcataggcatagcaccctgcaatgaatggaaaatggagtacccttatttac |
45326537 |
T |
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| Q |
287 |
aagactgaaaaaatgtatttgcatcagatgcaatattctagagtagtttctttagttgcttgagcaactgtacaatcttgttaaaga |
373 |
Q |
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| T |
45326536 |
aagac--aaaaactgtaattgcatcagacacaat--tctatagtagtttctttaaatccttgaacaactgtacaatcttgtaaaaga |
45326454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 46445334 - 46445421
Alignment:
| Q |
43 |
aagtcttttgttgagtgactttgtagccatgtagcacaaaacacttcaagttaaatgtgtgcatgagagtccatcatgtgtcggtgtc |
130 |
Q |
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| T |
46445334 |
aagttttttgttgagtgacttattagctatgtagcaaatgacacttcaaattaaatgtgtgttggaggatccaacatgtgtcggtgtc |
46445421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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