View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-7 (Length: 347)
Name: NF5079-Insertion-7
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 96 - 330
Target Start/End: Original strand, 7878762 - 7878990
Alignment:
| Q |
96 |
tttttatttggacggtgatatgtaaggtttgagtcaggactaatgcttctttcctggttttgaagaggtgattaggagagtttgggataaaaaataagtt |
195 |
Q |
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| T |
7878762 |
tttttatttggatggtgatatgtaaggtttgagtcaggactaatgcttctttccaggttttgaagaggtgattaggagagtttgggataaaaaataagtt |
7878861 |
T |
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| Q |
196 |
tggaaactcactattcggccgcctaatgatcaattaataataagcctaaagaatttgatgtgatctttgaaagaagaaaacatatcagatccaataaaat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7878862 |
tggaaactcactattcggccgcctaatgatcaattaataataagcctaaagaatttgatgtgatctttgaaagaagaaaacatatcagatccaataaaat |
7878961 |
T |
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| Q |
296 |
atgggaattactaaaatttattatcggtttaaggt |
330 |
Q |
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| T |
7878962 |
------attactaaaatttattatcggtctaaggt |
7878990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 96 - 330
Target Start/End: Original strand, 7883814 - 7884042
Alignment:
| Q |
96 |
tttttatttggacggtgatatgtaaggtttgagtcaggactaatgcttctttcctggttttgaagaggtgattaggagagtttgggataaaaaataagtt |
195 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883814 |
tttttatttggatggtgatatgtaaggtttgagtcaggactaatgcttctttccaggttttgaagaggtgattaggagagtttgggataaaaaataagtt |
7883913 |
T |
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| Q |
196 |
tggaaactcactattcggccgcctaatgatcaattaataataagcctaaagaatttgatgtgatctttgaaagaagaaaacatatcagatccaataaaat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883914 |
tggaaactcactattcggccgcctaatgatcaattaataataagcctaaagaatttgatgtgatctttgaaagaagaaaacatatcagatccaataaaat |
7884013 |
T |
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| Q |
296 |
atgggaattactaaaatttattatcggtttaaggt |
330 |
Q |
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| T |
7884014 |
------attactaaaatttattatcggtctaaggt |
7884042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 7873206 - 7873332
Alignment:
| Q |
166 |
attaggagagtttgggataaaaaataagtttggaaactcactattcggccgcctaatgatcaattaataataagcctaaagaatttgatgtgatctttga |
265 |
Q |
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|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
7873206 |
attacgagaatttgggataaaa-ataagtttggaaactcactattcggccgcctaatgaccaattaataataagcctaaaaa-----atgtgatctttga |
7873299 |
T |
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| Q |
266 |
aa-gaagaaaacatatcagatccaataaaatat |
297 |
Q |
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| T |
7873300 |
aaggaagaaaacatatcagatccaataaaatat |
7873332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 7878630 - 7878720
Alignment:
| Q |
8 |
gtttccgatgacgtccgatgcggacacgactttgacacatatgattttattgaaccttgaaatttggtcattttccggctctgtagtgttt |
98 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7878630 |
gtttccgatgacgtccgatgcgaacgtgactttgacacatatgattttattgaaccttgaaatttggtcattttccggctctgtagtgttt |
7878720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 7883682 - 7883772
Alignment:
| Q |
8 |
gtttccgatgacgtccgatgcggacacgactttgacacatatgattttattgaaccttgaaatttggtcattttccggctctgtagtgttt |
98 |
Q |
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| T |
7883682 |
gtttccgatgacgtccgatgcgaacgtgactttgacacatatgattttattgaaccttgaaatttggtcattttccggctctgtagtgttt |
7883772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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