View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5079-Insertion-9 (Length: 191)
Name: NF5079-Insertion-9
Description: NF5079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5079-Insertion-9 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 6e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 20590345 - 20590165
Alignment:
| Q |
11 |
atgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcggagtttcttcgcaagagctctattcctcgtggaataa |
110 |
Q |
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| T |
20590345 |
atgactcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttacttttcggagtttcttcgcaagagctctattcctcgtggaataa |
20590246 |
T |
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| Q |
111 |
taaccgaacaagttttatgggaattgctagtttactacatgtagcttcaaataaaacttttgacgtgcatgtgcgcttata |
191 |
Q |
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| T |
20590245 |
taaccaaacaagttttatgggaattgctagtttgctacctgtagcttcaactaaaacttttgacgtgcctatgcgcttata |
20590165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 20621223 - 20621045
Alignment:
| Q |
14 |
actcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcggagtttcttcgcaagagctctattcctcgtggaataataa |
113 |
Q |
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| T |
20621223 |
actcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttatttttcgtagtttcttcgcaagagctccattcctcgtggaataataa |
20621124 |
T |
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| Q |
114 |
ccgaacaag-ttttatgggaattgctagtttactacatgtagcttcaaataaaacttttgacgtgcatgtgcgcttata |
191 |
Q |
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| T |
20621123 |
ccggaaaagtttttatgggaattgctagtttgctacctgtagcttcaactaaaacttttgacatgcctgtgcgcttata |
20621045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 12058083 - 12058143
Alignment:
| Q |
14 |
actcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcgg |
74 |
Q |
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| T |
12058083 |
actcccactcttcttgatgtgttgaccattcttaatttgtggacaagaatttacttttcgg |
12058143 |
T |
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